Analysis of interatomic Contacts of Structural Units in PDB entry:
9RL3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9RL3 entry

There are 13 chains in PDB entry 9RL3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 3	ASP 252
D	MET 1	LYS 250
E	MET 1	SER 251
F	MET 1	ILE 234
3	TYR -13	ILE 148
4	MET 1	ILE 276
5	SER 2	ASN 267
B	THR 2	ALA 249
C	SER 3	ILE 244
G	THR 2	ASN 248
I	ALA -28	THR 231
J	PRO 4	ARG 203
K	MET 1	GLN 196

There are 89 helices in PDB entry 9RL3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	9	Right-handed alpha
Helix 2	AA2	A	25	34	Right-handed alpha
Helix 3	AA3	A	35	37	Right-handed 310
Helix 4	AA4	A	65	69	Right-handed 310
Helix 5	AA5	A	86	108	Right-handed alpha
Helix 6	AA6	A	113	131	Right-handed alpha
Helix 7	AA7	A	174	190	Right-handed alpha
Helix 8	AA8	A	198	215	Right-handed alpha
Helix 9	AA9	A	237	250	Right-handed alpha
Helix 10	AB1	D	17	28	Right-handed alpha
Helix 11	AB2	D	78	101	Right-handed alpha
Helix 12	AB3	D	105	120	Right-handed alpha
Helix 13	AB4	D	167	179	Right-handed alpha
Helix 14	AB5	D	187	203	Right-handed alpha
Helix 15	AB6	D	225	247	Right-handed alpha
Helix 16	AB7	E	22	32	Right-handed alpha
Helix 17	AB8	E	81	104	Right-handed alpha
Helix 18	AB9	E	108	121	Right-handed alpha
Helix 19	AC1	E	122	124	Right-handed 310
Helix 20	AC2	E	175	187	Right-handed alpha
Helix 21	AC3	E	192	207	Right-handed alpha
Helix 22	AC4	E	232	251	Right-handed alpha
Helix 23	AC5	F	1	5	Right-handed 310
Helix 24	AC6	F	19	28	Right-handed alpha
Helix 25	AC7	F	29	32	Right-handed 310
Helix 26	AC8	F	77	99	Right-handed alpha
Helix 27	AC9	F	104	119	Right-handed alpha
Helix 28	AD1	F	165	176	Right-handed alpha
Helix 29	AD2	F	185	199	Right-handed alpha
Helix 30	AD3	F	228	231	Right-handed 310
Helix 31	AD4	3	-12	-5	Right-handed alpha
Helix 32	AD5	3	52	57	Right-handed alpha
Helix 33	AD6	3	59	76	Right-handed alpha
Helix 34	AD7	3	78	94	Right-handed alpha
Helix 35	AD8	3	104	111	Right-handed alpha
Helix 36	AD9	3	118	123	Right-handed alpha
Helix 37	AE1	3	137	147	Right-handed alpha
Helix 38	AE2	4	56	58	Right-handed 310
Helix 39	AE3	4	62	67	Right-handed alpha
Helix 40	AE4	4	95	100	Right-handed alpha
Helix 41	AE5	4	105	110	Right-handed alpha
Helix 42	AE6	4	143	159	Right-handed alpha
Helix 43	AE7	4	195	207	Right-handed alpha
Helix 44	AE8	4	231	247	Right-handed alpha
Helix 45	AE9	4	249	262	Right-handed alpha
Helix 46	AF1	5	10	12	Right-handed 310
Helix 47	AF2	5	13	24	Right-handed alpha
Helix 48	AF3	5	94	101	Right-handed alpha
Helix 49	AF4	5	102	111	Right-handed alpha
Helix 50	AF5	5	145	149	Right-handed 310
Helix 51	AF6	5	183	194	Right-handed alpha
Helix 52	AF7	5	219	231	Right-handed alpha
Helix 53	AF8	5	246	252	Right-handed 310
Helix 54	AF9	B	18	30	Right-handed alpha
Helix 55	AG1	B	57	61	Right-handed 310
Helix 56	AG2	B	78	97	Right-handed alpha
Helix 57	AG3	B	97	102	Right-handed alpha
Helix 58	AG4	B	106	120	Right-handed alpha
Helix 59	AG5	B	121	124	Right-handed 310
Helix 60	AG6	B	168	178	Right-handed alpha
Helix 61	AG7	B	184	200	Right-handed alpha
Helix 62	AG8	B	218	222	Right-handed 310
Helix 63	AG9	B	239	248	Right-handed alpha
Helix 64	AH1	C	19	30	Right-handed alpha
Helix 65	AH2	C	80	103	Right-handed alpha
Helix 66	AH3	C	107	122	Right-handed alpha
Helix 67	AH4	C	168	179	Right-handed alpha
Helix 68	AH5	C	185	200	Right-handed alpha
Helix 69	AH6	C	231	243	Right-handed alpha
Helix 70	AH7	G	21	32	Right-handed alpha
Helix 71	AH8	G	81	104	Right-handed alpha
Helix 72	AH9	G	108	122	Right-handed alpha
Helix 73	AI1	G	123	125	Right-handed 310
Helix 74	AI2	G	169	183	Right-handed alpha
Helix 75	AI3	G	188	204	Right-handed alpha
Helix 76	AI4	G	233	246	Right-handed alpha
Helix 77	AI5	I	-22	-11	Right-handed alpha
Helix 78	AI6	I	48	71	Right-handed alpha
Helix 79	AI7	I	75	90	Right-handed alpha
Helix 80	AI8	I	130	142	Right-handed alpha
Helix 81	AI9	I	147	164	Right-handed alpha
Helix 82	AJ1	J	56	79	Right-handed alpha
Helix 83	AJ2	J	83	98	Right-handed alpha
Helix 84	AJ3	J	142	153	Right-handed alpha
Helix 85	AJ4	J	159	175	Right-handed alpha
Helix 86	AJ5	K	51	72	Right-handed alpha
Helix 87	AJ6	K	76	92	Right-handed alpha
Helix 88	AJ7	K	140	148	Right-handed alpha
Helix 89	AJ8	K	153	172	Right-handed alpha

There are 32 sheets in PDB entry 9RL3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	169	first strand
Strand 2	A	42	46	anti-parallel
Strand 3	A	51	56	anti-parallel
Strand 4	A	223	228	anti-parallel
Strand 5	A	233	235	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	74	first strand
Strand 2	A	79	84	anti-parallel
Strand 3	A	140	147	anti-parallel
Strand 4	A	151	156	anti-parallel
Strand 5	A	164	166	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	163	164	first strand
Strand 2	D	33	34	anti-parallel
Strand 3	D	44	47	anti-parallel
Strand 4	D	210	213	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	65	66	first strand
Strand 2	D	71	73	anti-parallel
Strand 3	D	136	138	anti-parallel
Strand 4	D	145	150	anti-parallel
Strand 5	D	156	159	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	75	77	first strand
Strand 2	D	131	133	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	215	216	first strand
Strand 2	D	220	221	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	37	40	first strand
Strand 2	E	169	172	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	49	51	first strand
Strand 2	E	217	221	anti-parallel
Strand 3	E	229	230	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	67	69	first strand
Strand 2	E	74	80	anti-parallel
Strand 3	E	140	142	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	67	69	first strand
Strand 2	E	74	80	anti-parallel
Strand 3	E	145	146	anti-parallel
Strand 4	E	154	155	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	157	158	first strand
Strand 2	E	164	165	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	158	161	first strand
Strand 2	F	35	39	anti-parallel
Strand 3	F	44	49	anti-parallel
Strand 4	F	211	216	anti-parallel
Strand 5	F	223	226	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	63	65	first strand
Strand 2	F	70	76	anti-parallel
Strand 3	F	130	137	anti-parallel
Strand 4	F	142	148	anti-parallel
Strand 5	F	152	155	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	35	37	first strand
Strand 2	4	69	79	anti-parallel
Strand 3	4	117	127	anti-parallel
Strand 4	4	130	135	anti-parallel
Strand 5	4	49	54	parallel
Strand 6	4	164	171	parallel
Strand 7	4	214	220	parallel
Strand 8	4	178	181	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	193	194	first strand
Strand 2	5	44	45	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	31	35	first strand
Strand 2	5	70	75	anti-parallel
Strand 3	5	80	85	anti-parallel
Strand 4	5	3	7	parallel
Strand 5	5	114	121	parallel
Strand 6	5	204	211	parallel
Strand 7	5	138	140	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	164	first strand
Strand 2	B	34	39	anti-parallel
Strand 3	B	42	48	anti-parallel
Strand 4	B	209	214	anti-parallel
Strand 5	B	235	237	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	68	first strand
Strand 2	B	71	73	anti-parallel
Strand 3	B	137	139	anti-parallel
Strand 4	B	145	147	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	150	first strand
Strand 2	B	156	157	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	49	first strand
Strand 2	C	211	217	anti-parallel
Strand 3	C	226	227	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	68	first strand
Strand 2	C	73	76	anti-parallel
Strand 3	C	135	141	anti-parallel
Strand 4	C	145	151	anti-parallel
Strand 5	C	157	159	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	163	165	first strand
Strand 2	G	37	41	anti-parallel
Strand 3	G	46	53	anti-parallel
Strand 4	G	212	214	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	163	165	first strand
Strand 2	G	37	41	anti-parallel
Strand 3	G	46	53	anti-parallel
Strand 4	G	217	219	anti-parallel
Strand 5	G	228	230	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	68	69	first strand
Strand 2	G	74	77	anti-parallel
Strand 3	G	137	142	anti-parallel
Strand 4	G	145	151	anti-parallel
Strand 5	G	157	159	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	126	128	first strand
Strand 2	I	2	8	anti-parallel
Strand 3	I	11	17	anti-parallel
Strand 4	I	173	179	anti-parallel
Strand 5	I	185	187	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	34	38	first strand
Strand 2	I	41	44	anti-parallel
Strand 3	I	96	104	anti-parallel
Strand 4	I	46	47	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	34	38	first strand
Strand 2	I	41	44	anti-parallel
Strand 3	I	96	104	anti-parallel
Strand 4	I	107	113	anti-parallel
Strand 5	I	119	121	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	137	140	first strand
Strand 2	J	11	15	anti-parallel
Strand 3	J	22	27	anti-parallel
Strand 4	J	184	188	anti-parallel
Strand 5	J	197	201	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	43	46	first strand
Strand 2	J	49	55	anti-parallel
Strand 3	J	105	112	anti-parallel
Strand 4	J	119	123	anti-parallel
Strand 5	J	131	132	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	130	133	first strand
Strand 2	K	4	7	anti-parallel
Strand 3	K	15	17	anti-parallel
Strand 4	K	180	185	anti-parallel
Strand 5	K	188	192	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	35	39	first strand
Strand 2	K	42	45	anti-parallel
Strand 3	K	105	108	anti-parallel
Strand 4	K	113	116	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	118	119	first strand
Strand 2	K	125	126	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9RL3

Analysis of interatomic Contacts of Structural Units in PDB entry:
9RL3