Analysis of interatomic Contacts of Structural Units in PDB entry:
9RLE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9RLE entry

There are 5 chains in PDB entry 9RLE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	MET 1	GLU 399
E	ALA 2	GLY 413
D	ASN 2	LEU 227
F	ASN 2	GLU 226
P	CYS 1	PHE 160

There are 52 helices in PDB entry 9RLE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	4	15	Right-handed alpha
Helix 2	AA2	C	20	28	Right-handed alpha
Helix 3	AA3	C	28	60	Right-handed alpha
Helix 4	AA4	C	81	85	Right-handed 310
Helix 5	AA5	C	125	127	Right-handed 310
Helix 6	AA6	C	133	137	Right-handed 310
Helix 7	AA7	C	148	155	Right-handed alpha
Helix 8	AA8	C	194	198	Right-handed 310
Helix 9	AA9	C	205	212	Right-handed alpha
Helix 10	AB1	C	234	238	Right-handed 310
Helix 11	AB2	C	249	304	Right-handed alpha
Helix 12	AB3	C	306	348	Right-handed alpha
Helix 13	AB4	C	361	390	Right-handed alpha
Helix 14	AB5	C	391	396	Right-handed alpha
Helix 15	AB6	E	4	17	Right-handed alpha
Helix 16	AB7	E	21	59	Right-handed alpha
Helix 17	AB8	E	77	87	Right-handed alpha
Helix 18	AB9	E	119	127	Right-handed alpha
Helix 19	AC1	E	128	133	Right-handed 310
Helix 20	AC2	E	152	159	Right-handed alpha
Helix 21	AC3	E	197	201	Right-handed 310
Helix 22	AC4	E	208	215	Right-handed alpha
Helix 23	AC5	E	230	232	Right-handed 310
Helix 24	AC6	E	233	245	Right-handed alpha
Helix 25	AC7	E	254	298	Right-handed alpha
Helix 26	AC8	E	298	309	Right-handed alpha
Helix 27	AC9	E	311	344	Right-handed alpha
Helix 28	AD1	E	344	357	Right-handed alpha
Helix 29	AD2	E	376	404	Right-handed alpha
Helix 30	AD3	E	406	412	Right-handed alpha
Helix 31	AD4	D	49	56	Right-handed alpha
Helix 32	AD5	D	77	89	Right-handed alpha
Helix 33	AD6	D	103	115	Right-handed alpha
Helix 34	AD7	D	118	134	Right-handed alpha
Helix 35	AD8	D	149	161	Right-handed alpha
Helix 36	AD9	D	177	195	Right-handed alpha
Helix 37	AE1	D	207	212	Right-handed 310
Helix 38	AE2	F	49	56	Right-handed alpha
Helix 39	AE3	F	72	76	Right-handed 310
Helix 40	AE4	F	77	89	Right-handed alpha
Helix 41	AE5	F	103	116	Right-handed alpha
Helix 42	AE6	F	118	134	Right-handed alpha
Helix 43	AE7	F	149	160	Right-handed alpha
Helix 44	AE8	F	177	196	Right-handed alpha
Helix 45	AE9	F	207	211	Right-handed 310
Helix 46	AF1	P	24	28	Right-handed 310
Helix 47	AF2	P	34	47	Right-handed alpha
Helix 48	AF3	P	60	62	Right-handed 310
Helix 49	AF4	P	63	77	Right-handed alpha
Helix 50	AF5	P	93	116	Right-handed alpha
Helix 51	AF6	P	118	120	Right-handed 310
Helix 52	AF7	P	138	146	Right-handed alpha

There are 11 sheets in PDB entry 9RLE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	96	first strand
Strand 2	C	221	226	anti-parallel
Strand 3	C	66	69	anti-parallel
Strand 4	C	245	248	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	130	first strand
Strand 2	C	185	190	anti-parallel
Strand 3	C	160	161	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	130	first strand
Strand 2	C	185	190	anti-parallel
Strand 3	C	143	147	parallel
Strand 4	C	200	204	anti-parallel
Strand 5	C	109	117	parallel
Strand 6	C	98	104	anti-parallel
Strand 7	C	163	165	anti-parallel
Strand 8	C	181	182	anti-parallel

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There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	14	16	first strand
Strand 2	E	249	253	anti-parallel
Strand 3	E	66	69	anti-parallel
Strand 4	E	223	228	anti-parallel
Strand 5	E	91	99	anti-parallel
Strand 6	E	112	118	anti-parallel
Strand 7	E	203	207	parallel
Strand 8	E	147	151	anti-parallel
Strand 9	E	183	193	parallel
Strand 10	E	166	170	anti-parallel
Strand 11	E	102	103	anti-parallel
Strand 12	E	112	118	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	33	first strand
Strand 2	D	4	9	anti-parallel
Strand 3	D	65	68	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	15	first strand
Strand 2	D	22	25	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	93	first strand
Strand 2	D	166	170	parallel
Strand 3	D	198	202	parallel
Strand 4	D	37	41	parallel
Strand 5	D	214	218	parallel
Strand 6	D	223	224	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	31	33	first strand
Strand 2	F	4	9	anti-parallel
Strand 3	F	65	68	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	13	15	first strand
Strand 2	F	22	25	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	90	92	first strand
Strand 2	F	166	170	parallel
Strand 3	F	198	202	parallel
Strand 4	F	37	41	parallel
Strand 5	F	214	218	parallel
Strand 6	F	223	224	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	49	51	first strand
Strand 2	P	147	151	anti-parallel
Strand 3	P	82	87	anti-parallel
Strand 4	P	122	128	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9RLE

Analysis of interatomic Contacts of Structural Units in PDB entry:
9RLE