Analysis of interatomic Contacts of Structural Units in PDB entry:
9RLJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9RLJ entry

There are 4 chains in PDB entry 9RLJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	MET 1	GLU 399
E	ALA 2	GLN 414
D	ASN 2	LEU 229
F	ASN 2	LEU 229

There are 47 helices in PDB entry 9RLJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	4	16	Right-handed alpha
Helix 2	AA2	C	20	28	Right-handed alpha
Helix 3	AA3	C	28	59	Right-handed alpha
Helix 4	AA4	C	81	85	Right-handed 310
Helix 5	AA5	C	125	127	Right-handed 310
Helix 6	AA6	C	133	137	Right-handed 310
Helix 7	AA7	C	148	155	Right-handed alpha
Helix 8	AA8	C	194	198	Right-handed 310
Helix 9	AA9	C	205	212	Right-handed alpha
Helix 10	AB1	C	233	238	Right-handed 310
Helix 11	AB2	C	254	293	Right-handed alpha
Helix 12	AB3	C	295	304	Right-handed alpha
Helix 13	AB4	C	306	347	Right-handed alpha
Helix 14	AB5	C	361	380	Right-handed alpha
Helix 15	AB6	C	380	389	Right-handed alpha
Helix 16	AB7	C	391	397	Right-handed alpha
Helix 17	AB8	E	4	15	Right-handed alpha
Helix 18	AB9	E	24	59	Right-handed alpha
Helix 19	AC1	E	82	87	Right-handed alpha
Helix 20	AC2	E	128	133	Right-handed 310
Helix 21	AC3	E	152	159	Right-handed alpha
Helix 22	AC4	E	197	202	Right-handed 310
Helix 23	AC5	E	207	214	Right-handed alpha
Helix 24	AC6	E	230	232	Right-handed 310
Helix 25	AC7	E	233	245	Right-handed alpha
Helix 26	AC8	E	254	258	Right-handed alpha
Helix 27	AC9	E	261	297	Right-handed alpha
Helix 28	AD1	E	298	308	Right-handed alpha
Helix 29	AD2	E	311	321	Right-handed alpha
Helix 30	AD3	E	325	344	Right-handed alpha
Helix 31	AD4	E	344	357	Right-handed alpha
Helix 32	AD5	E	376	403	Right-handed alpha
Helix 33	AD6	D	47	56	Right-handed alpha
Helix 34	AD7	D	77	88	Right-handed alpha
Helix 35	AD8	D	103	116	Right-handed alpha
Helix 36	AD9	D	118	134	Right-handed alpha
Helix 37	AE1	D	147	161	Right-handed alpha
Helix 38	AE2	D	177	195	Right-handed alpha
Helix 39	AE3	D	205	210	Right-handed alpha
Helix 40	AE4	F	47	56	Right-handed alpha
Helix 41	AE5	F	77	88	Right-handed alpha
Helix 42	AE6	F	103	116	Right-handed alpha
Helix 43	AE7	F	118	134	Right-handed alpha
Helix 44	AE8	F	135	139	Right-handed 310
Helix 45	AE9	F	147	161	Right-handed alpha
Helix 46	AF1	F	177	195	Right-handed alpha
Helix 47	AF2	F	205	210	Right-handed alpha

There are 12 sheets in PDB entry 9RLJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	96	first strand
Strand 2	C	221	226	anti-parallel
Strand 3	C	66	69	anti-parallel
Strand 4	C	245	248	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	130	first strand
Strand 2	C	185	190	anti-parallel
Strand 3	C	143	147	parallel
Strand 4	C	200	204	anti-parallel
Strand 5	C	109	117	parallel
Strand 6	C	98	104	anti-parallel
Strand 7	C	163	165	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	171	first strand
Strand 2	C	178	179	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	115	118	first strand
Strand 2	E	96	100	anti-parallel
Strand 3	E	223	225	anti-parallel
Strand 4	E	66	70	anti-parallel
Strand 5	E	249	253	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	91	93	first strand
Strand 2	E	227	228	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	166	170	first strand
Strand 2	E	183	193	anti-parallel
Strand 3	E	147	151	parallel
Strand 4	E	204	205	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	33	first strand
Strand 2	D	4	9	anti-parallel
Strand 3	D	65	68	anti-parallel
Strand 4	D	71	72	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	16	first strand
Strand 2	D	21	28	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	89	92	first strand
Strand 2	D	166	170	parallel
Strand 3	D	198	203	parallel
Strand 4	D	37	42	parallel
Strand 5	D	216	219	parallel
Strand 6	D	222	223	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	31	33	first strand
Strand 2	F	4	9	anti-parallel
Strand 3	F	65	68	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	15	first strand
Strand 2	F	22	28	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	89	92	first strand
Strand 2	F	166	170	parallel
Strand 3	F	198	203	parallel
Strand 4	F	37	41	parallel
Strand 5	F	214	219	parallel
Strand 6	F	222	224	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9RLJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9RLJ