Analysis of interatomic Contacts of Structural Units in PDB entry:
9RLZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9RLZ entry

There are 16 chains in PDB entry 9RLZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
M	ASN 8	TYR 217
A	GLY 3	ASP 252
D	MET 1	LYS 250
E	MET 1	GLU 250
F	MET 1	ILE 234
H	THR 1	PRO 190
3	ASP -14	ILE 148
4	MET 1	ILE 276
5	SER 2	ASN 267
B	THR 2	ALA 249
C	SER 3	ILE 244
G	THR 2	ASN 248
I	ALA -28	THR 231
J	PRO 4	ARG 203
K	MET 1	GLN 196
L	MET -75	ASN 190

There are111 helices in PDB entry 9RLZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	M	57	79	Right-handed alpha
Helix 2	AA2	M	85	99	Right-handed alpha
Helix 3	AA3	M	176	192	Right-handed alpha
Helix 4	AA4	A	25	34	Right-handed alpha
Helix 5	AA5	A	35	37	Right-handed 310
Helix 6	AA6	A	65	69	Right-handed 310
Helix 7	AA7	A	86	109	Right-handed alpha
Helix 8	AA8	A	113	131	Right-handed alpha
Helix 9	AA9	A	174	190	Right-handed alpha
Helix 10	AB1	A	198	215	Right-handed alpha
Helix 11	AB2	A	237	246	Right-handed alpha
Helix 12	AB3	D	17	28	Right-handed alpha
Helix 13	AB4	D	78	101	Right-handed alpha
Helix 14	AB5	D	105	120	Right-handed alpha
Helix 15	AB6	D	167	179	Right-handed alpha
Helix 16	AB7	D	187	200	Right-handed alpha
Helix 17	AB8	D	206	208	Right-handed 310
Helix 18	AB9	D	225	246	Right-handed alpha
Helix 19	AC1	E	21	32	Right-handed alpha
Helix 20	AC2	E	60	64	Right-handed 310
Helix 21	AC3	E	81	104	Right-handed alpha
Helix 22	AC4	E	108	121	Right-handed alpha
Helix 23	AC5	E	122	124	Right-handed 310
Helix 24	AC6	E	175	187	Right-handed alpha
Helix 25	AC7	E	192	208	Right-handed alpha
Helix 26	AC8	E	232	249	Right-handed alpha
Helix 27	AC9	F	2	6	Right-handed 310
Helix 28	AD1	F	19	28	Right-handed alpha
Helix 29	AD2	F	29	32	Right-handed 310
Helix 30	AD3	F	78	98	Right-handed alpha
Helix 31	AD4	F	104	118	Right-handed alpha
Helix 32	AD5	F	119	121	Right-handed 310
Helix 33	AD6	F	164	175	Right-handed alpha
Helix 34	AD7	F	175	180	Right-handed alpha
Helix 35	AD8	F	185	198	Right-handed alpha
Helix 36	AD9	F	199	201	Right-handed 310
Helix 37	AE1	F	226	231	Right-handed 310
Helix 38	AE2	H	48	71	Right-handed alpha
Helix 39	AE3	H	74	89	Right-handed alpha
Helix 40	AE4	H	128	134	Right-handed alpha
Helix 41	AE5	H	134	142	Right-handed alpha
Helix 42	AE6	H	147	166	Right-handed alpha
Helix 43	AE7	3	-12	-5	Right-handed alpha
Helix 44	AE8	3	31	36	Right-handed alpha
Helix 45	AE9	3	42	47	Right-handed 310
Helix 46	AF1	3	53	59	Right-handed alpha
Helix 47	AF2	3	59	76	Right-handed alpha
Helix 48	AF3	3	78	94	Right-handed alpha
Helix 49	AF4	3	104	111	Right-handed alpha
Helix 50	AF5	3	118	123	Right-handed alpha
Helix 51	AF6	3	137	147	Right-handed alpha
Helix 52	AF7	4	43	47	Right-handed 310
Helix 53	AF8	4	56	61	Right-handed 310
Helix 54	AF9	4	62	67	Right-handed alpha
Helix 55	AG1	4	95	100	Right-handed alpha
Helix 56	AG2	4	143	159	Right-handed alpha
Helix 57	AG3	4	195	206	Right-handed alpha
Helix 58	AG4	4	231	247	Right-handed alpha
Helix 59	AG5	4	249	263	Right-handed alpha
Helix 60	AG6	4	265	269	Right-handed 310
Helix 61	AG7	5	10	12	Right-handed 310
Helix 62	AG8	5	13	25	Right-handed alpha
Helix 63	AG9	5	94	101	Right-handed alpha
Helix 64	AH1	5	102	111	Right-handed alpha
Helix 65	AH2	5	148	154	Right-handed alpha
Helix 66	AH3	5	183	195	Right-handed alpha
Helix 67	AH4	5	217	231	Right-handed alpha
Helix 68	AH5	5	246	252	Right-handed 310
Helix 69	AH6	B	18	30	Right-handed alpha
Helix 70	AH7	B	57	61	Right-handed 310
Helix 71	AH8	B	78	96	Right-handed alpha
Helix 72	AH9	B	97	102	Right-handed alpha
Helix 73	AI1	B	106	120	Right-handed alpha
Helix 74	AI2	B	167	177	Right-handed alpha
Helix 75	AI3	B	184	200	Right-handed alpha
Helix 76	AI4	B	218	222	Right-handed 310
Helix 77	AI5	B	239	249	Right-handed alpha
Helix 78	AI6	C	19	30	Right-handed alpha
Helix 79	AI7	C	58	62	Right-handed 310
Helix 80	AI8	C	81	103	Right-handed alpha
Helix 81	AI9	C	107	122	Right-handed alpha
Helix 82	AJ1	C	168	179	Right-handed alpha
Helix 83	AJ2	C	185	200	Right-handed alpha
Helix 84	AJ3	C	207	209	Right-handed 310
Helix 85	AJ4	C	231	243	Right-handed alpha
Helix 86	AJ5	G	21	32	Right-handed alpha
Helix 87	AJ6	G	81	104	Right-handed alpha
Helix 88	AJ7	G	108	122	Right-handed alpha
Helix 89	AJ8	G	123	125	Right-handed 310
Helix 90	AJ9	G	168	183	Right-handed alpha
Helix 91	AK1	G	188	204	Right-handed alpha
Helix 92	AK2	G	220	225	Right-handed alpha
Helix 93	AK3	G	233	245	Right-handed alpha
Helix 94	AK4	I	-21	-11	Right-handed alpha
Helix 95	AK5	I	48	71	Right-handed alpha
Helix 96	AK6	I	75	90	Right-handed alpha
Helix 97	AK7	I	130	141	Right-handed alpha
Helix 98	AK8	I	147	165	Right-handed alpha
Helix 99	AK9	J	56	79	Right-handed alpha
Helix 100	AL1	J	83	98	Right-handed alpha
Helix 101	AL2	J	145	154	Right-handed alpha
Helix 102	AL3	J	159	174	Right-handed alpha
Helix 103	AL4	K	51	72	Right-handed alpha
Helix 104	AL5	K	76	92	Right-handed alpha
Helix 105	AL6	K	138	147	Right-handed alpha
Helix 106	AL7	K	153	172	Right-handed alpha
Helix 107	AL8	L	-74	-68	Right-handed alpha
Helix 108	AL9	L	48	71	Right-handed alpha
Helix 109	AM1	L	75	90	Right-handed alpha
Helix 110	AM2	L	132	143	Right-handed alpha
Helix 111	AM3	L	149	165	Right-handed alpha

There are 30 sheets in PDB entry 9RLZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	136	140	first strand
Strand 2	M	11	16	anti-parallel
Strand 3	M	21	25	anti-parallel
Strand 4	M	203	208	anti-parallel
Strand 5	M	211	216	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	43	45	first strand
Strand 2	M	51	56	anti-parallel
Strand 3	M	107	114	anti-parallel
Strand 4	M	120	125	anti-parallel
Strand 5	M	131	133	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	171	first strand
Strand 2	A	42	46	anti-parallel
Strand 3	A	51	55	anti-parallel
Strand 4	A	224	228	anti-parallel
Strand 5	A	233	235	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	74	first strand
Strand 2	A	79	84	anti-parallel
Strand 3	A	140	147	anti-parallel
Strand 4	A	151	157	anti-parallel
Strand 5	A	164	166	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	161	164	first strand
Strand 2	D	33	37	anti-parallel
Strand 3	D	42	47	anti-parallel
Strand 4	D	210	216	anti-parallel
Strand 5	D	220	223	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	64	68	first strand
Strand 2	D	71	77	anti-parallel
Strand 3	D	131	138	anti-parallel
Strand 4	D	145	150	anti-parallel
Strand 5	D	156	158	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	169	172	first strand
Strand 2	E	37	41	anti-parallel
Strand 3	E	46	51	anti-parallel
Strand 4	E	217	223	anti-parallel
Strand 5	E	227	230	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	67	71	first strand
Strand 2	E	74	80	anti-parallel
Strand 3	E	140	148	anti-parallel
Strand 4	E	152	158	anti-parallel
Strand 5	E	164	166	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	158	161	first strand
Strand 2	F	35	39	anti-parallel
Strand 3	F	43	48	anti-parallel
Strand 4	F	212	217	anti-parallel
Strand 5	F	223	225	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	63	67	first strand
Strand 2	F	70	77	anti-parallel
Strand 3	F	130	138	anti-parallel
Strand 4	F	141	148	anti-parallel
Strand 5	F	152	155	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	63	67	first strand
Strand 2	F	70	77	anti-parallel
Strand 3	4	275	276	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	124	127	first strand
Strand 2	H	3	6	anti-parallel
Strand 3	H	12	16	anti-parallel
Strand 4	H	174	178	anti-parallel
Strand 5	H	183	187	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	36	38	first strand
Strand 2	H	41	47	anti-parallel
Strand 3	H	95	101	anti-parallel
Strand 4	H	109	112	anti-parallel
Strand 5	H	120	122	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	35	37	first strand
Strand 2	4	73	80	anti-parallel
Strand 3	4	116	127	anti-parallel
Strand 4	4	130	135	anti-parallel
Strand 5	4	49	54	parallel
Strand 6	4	164	171	parallel
Strand 7	4	214	220	parallel
Strand 8	4	178	181	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	193	194	first strand
Strand 2	5	44	45	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	30	34	first strand
Strand 2	5	70	75	anti-parallel
Strand 3	5	80	85	anti-parallel
Strand 4	5	3	7	parallel
Strand 5	5	114	121	parallel
Strand 6	5	204	211	parallel
Strand 7	5	138	144	anti-parallel
Strand 8	5	169	170	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	164	first strand
Strand 2	B	34	39	anti-parallel
Strand 3	B	42	48	anti-parallel
Strand 4	B	209	214	anti-parallel
Strand 5	B	235	237	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	68	first strand
Strand 2	B	71	77	anti-parallel
Strand 3	B	132	140	anti-parallel
Strand 4	B	144	150	anti-parallel
Strand 5	B	156	158	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	225	first strand
Strand 2	I	184	187	parallel
Strand 3	I	173	179	anti-parallel
Strand 4	I	11	17	anti-parallel
Strand 5	I	3	8	anti-parallel
Strand 6	I	124	127	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	165	first strand
Strand 2	C	35	39	anti-parallel
Strand 3	C	43	49	anti-parallel
Strand 4	C	211	217	anti-parallel
Strand 5	C	226	229	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	68	first strand
Strand 2	C	73	79	anti-parallel
Strand 3	C	133	141	anti-parallel
Strand 4	C	145	151	anti-parallel
Strand 5	C	157	159	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	162	165	first strand
Strand 2	G	37	41	anti-parallel
Strand 3	G	46	52	anti-parallel
Strand 4	G	213	218	anti-parallel
Strand 5	G	229	230	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	68	71	first strand
Strand 2	G	74	80	anti-parallel
Strand 3	G	134	142	anti-parallel
Strand 4	G	145	151	anti-parallel
Strand 5	G	157	159	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	34	38	first strand
Strand 2	I	41	47	anti-parallel
Strand 3	I	96	104	anti-parallel
Strand 4	I	107	113	anti-parallel
Strand 5	I	119	121	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	221	227	first strand
Strand 2	J	195	202	anti-parallel
Strand 3	J	184	190	anti-parallel
Strand 4	J	21	27	anti-parallel
Strand 5	J	12	16	anti-parallel
Strand 6	J	136	139	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	43	45	first strand
Strand 2	J	49	55	anti-parallel
Strand 3	J	105	112	anti-parallel
Strand 4	J	119	124	anti-parallel
Strand 5	J	130	132	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	130	133	first strand
Strand 2	K	4	8	anti-parallel
Strand 3	K	13	18	anti-parallel
Strand 4	K	179	185	anti-parallel
Strand 5	K	188	192	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	25	27	first strand
Strand 2	L	126	129	anti-parallel
Strand 3	L	3	8	anti-parallel
Strand 4	L	11	17	anti-parallel
Strand 5	L	175	181	anti-parallel
Strand 6	L	184	187	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	36	39	first strand
Strand 2	K	42	48	anti-parallel
Strand 3	K	100	108	anti-parallel
Strand 4	K	113	119	anti-parallel
Strand 5	K	125	127	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	34	35	first strand
Strand 2	L	42	44	anti-parallel
Strand 3	L	98	105	anti-parallel
Strand 4	L	109	116	anti-parallel
Strand 5	L	121	123	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9RLZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9RLZ