Analysis of interatomic Contacts of Structural Units in PDB entry:
9RM1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9RM1 entry

There are 15 chains in PDB entry 9RM1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 3	ASP 252
D	MET 1	LYS 250
E	MET 1	GLU 250
F	MET 1	ILE 234
H	VAL 6	PRO 190
3	TYR -13	ILE 148
4	MET 1	ILE 276
5	SER 2	ASN 267
B	THR 2	ALA 249
C	SER 3	ILE 244
G	THR 2	ASN 248
I	ALA -28	THR 231
J	ILE 7	ARG 203
K	MET 1	GLN 196
L	MET -75	ASN 190

There are 98 helices in PDB entry 9RM1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	36	Right-handed alpha
Helix 2	AA2	A	86	106	Right-handed alpha
Helix 3	AA3	A	113	131	Right-handed alpha
Helix 4	AA4	A	174	190	Right-handed alpha
Helix 5	AA5	A	200	215	Right-handed alpha
Helix 6	AA6	A	237	246	Right-handed alpha
Helix 7	AA7	D	17	30	Right-handed alpha
Helix 8	AA8	D	78	101	Right-handed alpha
Helix 9	AA9	D	105	121	Right-handed alpha
Helix 10	AB1	D	167	179	Right-handed alpha
Helix 11	AB2	D	187	203	Right-handed alpha
Helix 12	AB3	D	225	246	Right-handed alpha
Helix 13	AB4	E	21	33	Right-handed alpha
Helix 14	AB5	E	81	104	Right-handed alpha
Helix 15	AB6	E	108	121	Right-handed alpha
Helix 16	AB7	E	122	124	Right-handed 310
Helix 17	AB8	E	175	187	Right-handed alpha
Helix 18	AB9	E	192	208	Right-handed alpha
Helix 19	AC1	E	232	250	Right-handed alpha
Helix 20	AC2	F	1	5	Right-handed 310
Helix 21	AC3	F	19	29	Right-handed alpha
Helix 22	AC4	F	77	100	Right-handed alpha
Helix 23	AC5	F	104	118	Right-handed alpha
Helix 24	AC6	F	164	175	Right-handed alpha
Helix 25	AC7	F	175	182	Right-handed alpha
Helix 26	AC8	F	185	199	Right-handed alpha
Helix 27	AC9	F	229	234	Right-handed alpha
Helix 28	AD1	H	48	70	Right-handed alpha
Helix 29	AD2	H	74	93	Right-handed alpha
Helix 30	AD3	H	128	134	Right-handed alpha
Helix 31	AD4	H	134	142	Right-handed alpha
Helix 32	AD5	H	147	166	Right-handed alpha
Helix 33	AD6	3	-12	-7	Right-handed alpha
Helix 34	AD7	3	42	48	Right-handed alpha
Helix 35	AD8	3	53	59	Right-handed alpha
Helix 36	AD9	3	60	76	Right-handed alpha
Helix 37	AE1	3	78	95	Right-handed alpha
Helix 38	AE2	3	104	111	Right-handed alpha
Helix 39	AE3	3	118	123	Right-handed alpha
Helix 40	AE4	3	137	147	Right-handed alpha
Helix 41	AE5	4	43	47	Right-handed 310
Helix 42	AE6	4	54	61	Right-handed 310
Helix 43	AE7	4	62	67	Right-handed alpha
Helix 44	AE8	4	95	100	Right-handed alpha
Helix 45	AE9	4	143	159	Right-handed alpha
Helix 46	AF1	4	195	207	Right-handed alpha
Helix 47	AF2	4	231	247	Right-handed alpha
Helix 48	AF3	4	249	263	Right-handed alpha
Helix 49	AF4	5	10	12	Right-handed 310
Helix 50	AF5	5	13	25	Right-handed alpha
Helix 51	AF6	5	94	101	Right-handed alpha
Helix 52	AF7	5	102	111	Right-handed alpha
Helix 53	AF8	5	148	154	Right-handed alpha
Helix 54	AF9	5	183	195	Right-handed alpha
Helix 55	AG1	5	217	231	Right-handed alpha
Helix 56	AG2	5	246	252	Right-handed 310
Helix 57	AG3	5	257	262	Right-handed alpha
Helix 58	AG4	B	18	30	Right-handed alpha
Helix 59	AG5	B	57	61	Right-handed 310
Helix 60	AG6	B	78	97	Right-handed alpha
Helix 61	AG7	B	97	102	Right-handed alpha
Helix 62	AG8	B	106	120	Right-handed alpha
Helix 63	AG9	B	167	179	Right-handed alpha
Helix 64	AH1	B	184	200	Right-handed alpha
Helix 65	AH2	B	218	222	Right-handed 310
Helix 66	AH3	B	239	249	Right-handed alpha
Helix 67	AH4	C	19	30	Right-handed alpha
Helix 68	AH5	C	58	62	Right-handed 310
Helix 69	AH6	C	80	103	Right-handed alpha
Helix 70	AH7	C	107	123	Right-handed alpha
Helix 71	AH8	C	169	179	Right-handed alpha
Helix 72	AH9	C	185	200	Right-handed alpha
Helix 73	AI1	C	231	243	Right-handed alpha
Helix 74	AI2	G	21	32	Right-handed alpha
Helix 75	AI3	G	81	104	Right-handed alpha
Helix 76	AI4	G	108	124	Right-handed alpha
Helix 77	AI5	G	168	183	Right-handed alpha
Helix 78	AI6	G	188	205	Right-handed alpha
Helix 79	AI7	G	233	246	Right-handed alpha
Helix 80	AI8	I	-22	-11	Right-handed alpha
Helix 81	AI9	I	48	71	Right-handed alpha
Helix 82	AJ1	I	75	91	Right-handed alpha
Helix 83	AJ2	I	130	142	Right-handed alpha
Helix 84	AJ3	I	147	163	Right-handed alpha
Helix 85	AJ4	I	217	221	Right-handed alpha
Helix 86	AJ5	J	56	79	Right-handed alpha
Helix 87	AJ6	J	83	98	Right-handed alpha
Helix 88	AJ7	J	143	154	Right-handed alpha
Helix 89	AJ8	J	159	178	Right-handed alpha
Helix 90	AJ9	K	51	72	Right-handed alpha
Helix 91	AK1	K	76	94	Right-handed alpha
Helix 92	AK2	K	137	146	Right-handed alpha
Helix 93	AK3	K	153	172	Right-handed alpha
Helix 94	AK4	L	-74	-67	Right-handed alpha
Helix 95	AK5	L	52	71	Right-handed alpha
Helix 96	AK6	L	75	90	Right-handed alpha
Helix 97	AK7	L	132	143	Right-handed alpha
Helix 98	AK8	L	149	165	Right-handed alpha

There are 31 sheets in PDB entry 9RM1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	42	45	anti-parallel
Strand 3	A	168	171	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	83	first strand
Strand 2	A	141	145	anti-parallel
Strand 3	A	153	154	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	46	first strand
Strand 2	D	211	216	anti-parallel
Strand 3	D	220	223	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	65	66	first strand
Strand 2	D	72	73	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	169	172	first strand
Strand 2	E	37	41	anti-parallel
Strand 3	E	46	51	anti-parallel
Strand 4	E	217	223	anti-parallel
Strand 5	E	227	230	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	79	80	first strand
Strand 2	E	140	141	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	145	148	first strand
Strand 2	E	152	155	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	37	38	first strand
Strand 2	F	158	159	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	49	first strand
Strand 2	F	211	215	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	64	65	first strand
Strand 2	F	71	73	anti-parallel
Strand 3	F	132	134	anti-parallel
Strand 4	F	145	147	anti-parallel
Strand 5	F	153	155	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	14	first strand
Strand 2	H	176	179	anti-parallel
Strand 3	H	183	184	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	41	42	first strand
Strand 2	H	100	101	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	111	112	first strand
Strand 2	H	120	121	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	126	127	first strand
Strand 2	4	130	131	anti-parallel
Strand 3	4	49	50	parallel
Strand 4	4	164	167	parallel
Strand 5	4	214	216	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	72	73	first strand
Strand 2	4	123	124	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	34	35	first strand
Strand 2	5	71	72	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	141	142	first strand
Strand 2	5	169	170	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	164	165	first strand
Strand 2	5	179	180	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	140	first strand
Strand 2	B	144	148	anti-parallel
Strand 3	B	158	159	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	214	first strand
Strand 2	B	235	236	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	165	first strand
Strand 2	C	35	38	anti-parallel
Strand 3	C	45	48	anti-parallel
Strand 4	C	212	215	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	37	42	first strand
Strand 2	G	45	53	anti-parallel
Strand 3	G	212	218	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	6	first strand
Strand 2	I	13	17	anti-parallel
Strand 3	I	173	174	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	46	47	first strand
Strand 2	I	96	97	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	102	103	first strand
Strand 2	I	108	109	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	112	113	first strand
Strand 2	I	119	120	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	223	224	first strand
Strand 2	J	195	200	anti-parallel
Strand 3	J	185	190	anti-parallel
Strand 4	J	24	26	anti-parallel
Strand 5	J	12	14	anti-parallel
Strand 6	J	137	138	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	7	8	first strand
Strand 2	K	12	14	anti-parallel
Strand 3	K	183	185	anti-parallel
Strand 4	K	189	190	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	117	118	first strand
Strand 2	K	126	127	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	12	13	first strand
Strand 2	L	177	180	anti-parallel
Strand 3	L	187	189	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	102	104	first strand
Strand 2	L	110	115	anti-parallel
Strand 3	L	121	124	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9RM1

Analysis of interatomic Contacts of Structural Units in PDB entry:
9RM1