Analysis of interatomic Contacts of Structural Units in PDB entry:
9RM5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9RM5 entry

There are 7 chains in PDB entry 9RM5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
a	ALA 13	GLY 289
b	ASP 12	LYS 288
c	ASP 12	GLY 289
d	SER 11	GLY 290
e	SER 11	LYS 288
f	ASP 12	GLY 289
s	C 1	C 10

There are 66 helices in PDB entry 9RM5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	a	18	35	Right-handed alpha
Helix 2	AA2	a	38	46	Right-handed alpha
Helix 3	AA3	a	46	53	Right-handed alpha
Helix 4	AA4	a	56	75	Right-handed alpha
Helix 5	AA5	a	79	85	Right-handed alpha
Helix 6	AA6	a	96	105	Right-handed alpha
Helix 7	AA7	a	108	122	Right-handed alpha
Helix 8	AA8	a	139	151	Right-handed alpha
Helix 9	AA9	a	186	195	Right-handed alpha
Helix 10	AB1	a	237	243	Right-handed alpha
Helix 11	AB2	a	262	276	Right-handed alpha
Helix 12	AB3	b	18	35	Right-handed alpha
Helix 13	AB4	b	38	46	Right-handed alpha
Helix 14	AB5	b	46	53	Right-handed alpha
Helix 15	AB6	b	56	75	Right-handed alpha
Helix 16	AB7	b	80	85	Right-handed alpha
Helix 17	AB8	b	96	105	Right-handed alpha
Helix 18	AB9	b	108	122	Right-handed alpha
Helix 19	AC1	b	139	151	Right-handed alpha
Helix 20	AC2	b	186	195	Right-handed alpha
Helix 21	AC3	b	237	243	Right-handed alpha
Helix 22	AC4	b	262	276	Right-handed alpha
Helix 23	AC5	c	18	35	Right-handed alpha
Helix 24	AC6	c	38	46	Right-handed alpha
Helix 25	AC7	c	46	53	Right-handed alpha
Helix 26	AC8	c	56	78	Right-handed alpha
Helix 27	AC9	c	80	85	Right-handed alpha
Helix 28	AD1	c	96	105	Right-handed alpha
Helix 29	AD2	c	108	121	Right-handed alpha
Helix 30	AD3	c	139	149	Right-handed alpha
Helix 31	AD4	c	186	195	Right-handed alpha
Helix 32	AD5	c	237	243	Right-handed alpha
Helix 33	AD6	c	262	276	Right-handed alpha
Helix 34	AD7	d	18	35	Right-handed alpha
Helix 35	AD8	d	38	46	Right-handed alpha
Helix 36	AD9	d	46	53	Right-handed alpha
Helix 37	AE1	d	56	78	Right-handed alpha
Helix 38	AE2	d	79	85	Right-handed alpha
Helix 39	AE3	d	96	105	Right-handed alpha
Helix 40	AE4	d	108	122	Right-handed alpha
Helix 41	AE5	d	139	151	Right-handed alpha
Helix 42	AE6	d	186	195	Right-handed alpha
Helix 43	AE7	d	237	243	Right-handed alpha
Helix 44	AE8	d	262	276	Right-handed alpha
Helix 45	AE9	e	18	35	Right-handed alpha
Helix 46	AF1	e	38	46	Right-handed alpha
Helix 47	AF2	e	46	53	Right-handed alpha
Helix 48	AF3	e	56	78	Right-handed alpha
Helix 49	AF4	e	80	85	Right-handed alpha
Helix 50	AF5	e	96	105	Right-handed alpha
Helix 51	AF6	e	108	121	Right-handed alpha
Helix 52	AF7	e	139	151	Right-handed alpha
Helix 53	AF8	e	186	194	Right-handed alpha
Helix 54	AF9	e	237	243	Right-handed alpha
Helix 55	AG1	e	262	276	Right-handed alpha
Helix 56	AG2	f	18	35	Right-handed alpha
Helix 57	AG3	f	38	46	Right-handed alpha
Helix 58	AG4	f	46	53	Right-handed alpha
Helix 59	AG5	f	56	78	Right-handed alpha
Helix 60	AG6	f	79	85	Right-handed alpha
Helix 61	AG7	f	96	105	Right-handed alpha
Helix 62	AG8	f	108	122	Right-handed alpha
Helix 63	AG9	f	139	151	Right-handed alpha
Helix 64	AH1	f	183	195	Right-handed alpha
Helix 65	AH2	f	237	243	Right-handed alpha
Helix 66	AH3	f	262	276	Right-handed alpha

There are 18 sheets in PDB entry 9RM5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	154	156	first strand
Strand 2	a	174	177	parallel
Strand 3	a	216	220	parallel
Strand 4	a	129	133	parallel
Strand 5	a	245	249	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	199	203	first strand
Strand 2	a	206	211	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	227	229	first strand
Strand 2	a	232	234	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	154	156	first strand
Strand 2	b	174	177	parallel
Strand 3	b	216	220	parallel
Strand 4	b	129	133	parallel
Strand 5	b	245	249	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	200	203	first strand
Strand 2	b	206	210	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	227	228	first strand
Strand 2	b	233	234	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	154	156	first strand
Strand 2	c	174	177	parallel
Strand 3	c	216	220	parallel
Strand 4	c	129	133	parallel
Strand 5	c	245	249	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	200	203	first strand
Strand 2	c	206	210	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	227	228	first strand
Strand 2	c	233	234	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	154	156	first strand
Strand 2	d	174	178	parallel
Strand 3	d	216	220	parallel
Strand 4	d	129	133	parallel
Strand 5	d	245	249	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	199	203	first strand
Strand 2	d	206	211	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	227	229	first strand
Strand 2	d	232	234	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	154	156	first strand
Strand 2	e	174	178	parallel
Strand 3	e	216	220	parallel
Strand 4	e	129	133	parallel
Strand 5	e	245	249	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	199	203	first strand
Strand 2	e	206	211	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	227	228	first strand
Strand 2	e	233	234	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	154	156	first strand
Strand 2	f	174	178	parallel
Strand 3	f	216	220	parallel
Strand 4	f	129	133	parallel
Strand 5	f	245	249	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	199	203	first strand
Strand 2	f	206	211	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	227	229	first strand
Strand 2	f	232	234	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9RM5

Analysis of interatomic Contacts of Structural Units in PDB entry:
9RM5