Analysis of interatomic Contacts of Structural Units in PDB entry:
9RM9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9RM9 entry

There are 2 chains in PDB entry 9RM9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 1	PHE 751
B	GLN 1	CYS 459

There are 19 helices in PDB entry 9RM9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	354	359	Right-handed alpha
Helix 2	AA2	A	409	413	Right-handed 310
Helix 3	AA3	A	529	534	Right-handed alpha
Helix 4	AA4	A	558	562	Right-handed alpha
Helix 5	AA5	B	10	18	Right-handed alpha
Helix 6	AA6	B	36	40	Right-handed 310
Helix 7	AA7	B	43	48	Right-handed alpha
Helix 8	AA8	B	114	118	Right-handed 310
Helix 9	AA9	B	120	139	Right-handed alpha
Helix 10	AB1	B	191	201	Right-handed alpha
Helix 11	AB2	B	213	224	Right-handed alpha
Helix 12	AB3	B	224	229	Right-handed alpha
Helix 13	AB4	B	249	255	Right-handed 310
Helix 14	AB5	B	271	277	Right-handed 310
Helix 15	AB6	B	281	293	Right-handed alpha
Helix 16	AB7	B	304	315	Right-handed alpha
Helix 17	AB8	B	327	340	Right-handed alpha
Helix 18	AB9	B	436	440	Right-handed 310
Helix 19	AC1	B	443	447	Right-handed 310

There are 14 sheets in PDB entry 9RM9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	11	first strand
Strand 2	A	593	598	anti-parallel
Strand 3	A	585	590	anti-parallel
Strand 4	A	572	576	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	24	first strand
Strand 2	A	29	33	anti-parallel
Strand 3	A	47	51	anti-parallel
Strand 4	A	57	59	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	80	first strand
Strand 2	A	85	96	anti-parallel
Strand 3	A	101	110	anti-parallel
Strand 4	A	119	120	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	343	first strand
Strand 2	A	348	352	anti-parallel
Strand 3	A	361	365	anti-parallel
Strand 4	A	371	374	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	391	397	first strand
Strand 2	A	400	407	anti-parallel
Strand 3	A	415	422	anti-parallel
Strand 4	A	425	433	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	445	448	first strand
Strand 2	A	458	467	anti-parallel
Strand 3	A	472	479	anti-parallel
Strand 4	A	492	495	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	509	513	first strand
Strand 2	A	522	527	anti-parallel
Strand 3	A	536	540	anti-parallel
Strand 4	A	554	557	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	542	543	first strand
Strand 2	A	547	548	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	675	676	first strand
Strand 2	A	695	704	anti-parallel
Strand 3	A	630	644	anti-parallel
Strand 4	A	602	610	anti-parallel
Strand 5	A	736	737	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	686	690	first strand
Strand 2	A	657	664	anti-parallel
Strand 3	A	714	724	anti-parallel
Strand 4	A	745	749	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	22	first strand
Strand 2	B	41	42	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	66	first strand
Strand 2	B	80	85	anti-parallel
Strand 3	B	414	421	parallel
Strand 4	B	402	408	anti-parallel
Strand 5	B	344	349	anti-parallel
Strand 6	B	376	379	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	77	first strand
Strand 2	B	91	97	anti-parallel
Strand 3	B	387	395	anti-parallel
Strand 4	B	356	363	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	189	first strand
Strand 2	B	142	149	anti-parallel
Strand 3	B	105	112	parallel
Strand 4	B	234	241	parallel
Strand 5	B	294	300	parallel
Strand 6	B	320	322	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9RM9

Analysis of interatomic Contacts of Structural Units in PDB entry:
9RM9