Analysis of interatomic Contacts of Structural Units in PDB entry:
9RMC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9RMC entry

There are 22 chains in PDB entry 9RMC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 40	GLU 134
B	VAL 22	GLY 103
C	GLY 9	PRO 118
D	SER 33	ALA 125
E	HIS 40	GLU 134
F	LEU 23	GLY 102
G	GLY 9	PRO 118
H	ARG 34	ALA 125
I	SER 350	TRP 942
J	GLY 12	GLU 417
K	ASP 2	ARG 372
L	ILE 1639	SER 2285
M	SER 7	THR 381
N	GLU 414	GLU 943
O	HIS 423	ALA 942
P	LYS 125	GLN 501
Q	SER 172	LEU 276
R	GLY 13	LYS 82
V	ALA 141	VAL 208
W	VAL 41	ARG 113
X	C 16	G 146
Y	C 3	G 133

There are172 helices in PDB entry 9RMC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	58	Right-handed alpha
Helix 2	AA2	A	64	80	Right-handed alpha
Helix 3	AA3	A	86	115	Right-handed alpha
Helix 4	AA4	A	121	133	Right-handed alpha
Helix 5	AA5	B	25	30	Right-handed 310
Helix 6	AA6	B	31	42	Right-handed alpha
Helix 7	AA7	B	50	77	Right-handed alpha
Helix 8	AA8	B	83	94	Right-handed alpha
Helix 9	AA9	C	17	23	Right-handed alpha
Helix 10	AB1	C	27	37	Right-handed alpha
Helix 11	AB2	C	38	40	Right-handed 310
Helix 12	AB3	C	46	74	Right-handed alpha
Helix 13	AB4	C	80	91	Right-handed alpha
Helix 14	AB5	C	91	98	Right-handed alpha
Helix 15	AB6	C	113	117	Right-handed 310
Helix 16	AB7	D	38	50	Right-handed alpha
Helix 17	AB8	D	56	85	Right-handed alpha
Helix 18	AB9	D	91	103	Right-handed alpha
Helix 19	AC1	D	104	124	Right-handed alpha
Helix 20	AC2	E	45	58	Right-handed alpha
Helix 21	AC3	E	64	80	Right-handed alpha
Helix 22	AC4	E	86	115	Right-handed alpha
Helix 23	AC5	E	121	133	Right-handed alpha
Helix 24	AC6	F	25	30	Right-handed 310
Helix 25	AC7	F	31	42	Right-handed alpha
Helix 26	AC8	F	50	77	Right-handed alpha
Helix 27	AC9	F	83	94	Right-handed alpha
Helix 28	AD1	G	17	23	Right-handed alpha
Helix 29	AD2	G	27	37	Right-handed alpha
Helix 30	AD3	G	38	40	Right-handed 310
Helix 31	AD4	G	46	74	Right-handed alpha
Helix 32	AD5	G	80	91	Right-handed alpha
Helix 33	AD6	G	91	98	Right-handed alpha
Helix 34	AD7	G	113	117	Right-handed 310
Helix 35	AD8	H	38	50	Right-handed alpha
Helix 36	AD9	H	56	85	Right-handed alpha
Helix 37	AE1	H	91	103	Right-handed alpha
Helix 38	AE2	H	104	125	Right-handed alpha
Helix 39	AE3	I	362	387	Right-handed alpha
Helix 40	AE4	I	397	409	Right-handed alpha
Helix 41	AE5	I	409	429	Right-handed alpha
Helix 42	AE6	I	436	440	Right-handed 310
Helix 43	AE7	I	446	509	Right-handed alpha
Helix 44	AE8	I	757	767	Right-handed alpha
Helix 45	AE9	I	784	795	Right-handed alpha
Helix 46	AF1	I	815	826	Right-handed alpha
Helix 47	AF2	I	839	844	Right-handed alpha
Helix 48	AF3	I	845	849	Right-handed 310
Helix 49	AF4	I	917	925	Right-handed alpha
Helix 50	AF5	I	931	939	Right-handed alpha
Helix 51	AF6	J	70	77	Right-handed alpha
Helix 52	AF7	J	95	109	Right-handed alpha
Helix 53	AF8	J	129	143	Right-handed alpha
Helix 54	AF9	J	154	162	Right-handed alpha
Helix 55	AG1	J	189	192	Right-handed 310
Helix 56	AG2	J	198	214	Right-handed alpha
Helix 57	AG3	J	247	267	Right-handed alpha
Helix 58	AG4	J	299	307	Right-handed alpha
Helix 59	AG5	J	308	310	Right-handed 310
Helix 60	AG6	J	324	336	Right-handed alpha
Helix 61	AG7	J	340	346	Right-handed alpha
Helix 62	AG8	J	352	357	Right-handed 310
Helix 63	AG9	J	359	372	Right-handed alpha
Helix 64	AH1	J	381	390	Right-handed 310
Helix 65	AH2	J	391	401	Right-handed alpha
Helix 66	AH3	J	403	409	Right-handed alpha
Helix 67	AH4	K	3	7	Right-handed alpha
Helix 68	AH5	K	80	91	Right-handed alpha
Helix 69	AH6	K	112	124	Right-handed alpha
Helix 70	AH7	K	137	146	Right-handed alpha
Helix 71	AH8	K	171	175	Right-handed 310
Helix 72	AH9	K	181	197	Right-handed alpha
Helix 73	AI1	K	202	216	Right-handed alpha
Helix 74	AI2	K	223	232	Right-handed alpha
Helix 75	AI3	K	252	257	Right-handed alpha
Helix 76	AI4	K	258	262	Right-handed 310
Helix 77	AI5	K	263	268	Right-handed alpha
Helix 78	AI6	K	273	285	Right-handed alpha
Helix 79	AI7	K	288	295	Right-handed alpha
Helix 80	AI8	K	301	306	Right-handed 310
Helix 81	AI9	K	308	321	Right-handed alpha
Helix 82	AJ1	K	334	336	Right-handed 310
Helix 83	AJ2	K	337	347	Right-handed alpha
Helix 84	AJ3	K	349	354	Right-handed alpha
Helix 85	AJ4	K	359	366	Right-handed alpha
Helix 86	AJ5	K	367	372	Right-handed 310
Helix 87	AJ6	L	1645	1649	Right-handed 310
Helix 88	AJ7	L	1660	1665	Right-handed alpha
Helix 89	AJ8	L	1668	1678	Right-handed alpha
Helix 90	AJ9	L	1680	1697	Right-handed alpha
Helix 91	AK1	L	1700	1704	Right-handed 310
Helix 92	AK2	L	1711	1729	Right-handed alpha
Helix 93	AK3	L	1731	1735	Right-handed 310
Helix 94	AK4	L	1740	1744	Right-handed 310
Helix 95	AK5	L	1840	1846	Right-handed alpha
Helix 96	AK6	L	1971	1992	Right-handed alpha
Helix 97	AK7	L	1996	2003	Right-handed alpha
Helix 98	AK8	L	2004	2017	Right-handed alpha
Helix 99	AK9	L	2049	2068	Right-handed alpha
Helix 100	AL1	L	2077	2094	Right-handed alpha
Helix 101	AL2	L	2113	2126	Right-handed alpha
Helix 102	AL3	L	2128	2137	Right-handed alpha
Helix 103	AL4	L	2140	2158	Right-handed alpha
Helix 104	AL5	L	2160	2178	Right-handed alpha
Helix 105	AL6	L	2178	2187	Right-handed alpha
Helix 106	AL7	L	2190	2210	Right-handed alpha
Helix 107	AL8	L	2227	2243	Right-handed alpha
Helix 108	AL9	L	2244	2249	Right-handed 310
Helix 109	AM1	L	2254	2264	Right-handed alpha
Helix 110	AM2	L	2268	2284	Right-handed alpha
Helix 111	AM3	M	29	36	Right-handed alpha
Helix 112	AM4	M	41	47	Right-handed alpha
Helix 113	AM5	M	56	66	Right-handed alpha
Helix 114	AM6	M	79	84	Right-handed 310
Helix 115	AM7	M	93	100	Right-handed alpha
Helix 116	AM8	M	173	181	Right-handed alpha
Helix 117	AM9	M	214	226	Right-handed alpha
Helix 118	AN1	M	229	247	Right-handed alpha
Helix 119	AN2	M	289	302	Right-handed alpha
Helix 120	AN3	M	304	326	Right-handed alpha
Helix 121	AN4	M	327	329	Right-handed 310
Helix 122	AN5	M	342	350	Right-handed alpha
Helix 123	AN6	M	357	381	Right-handed alpha
Helix 124	AN7	N	427	431	Right-handed 310
Helix 125	AN8	N	440	446	Right-handed alpha
Helix 126	AN9	N	447	450	Right-handed 310
Helix 127	AO1	N	458	475	Right-handed alpha
Helix 128	AO2	N	482	490	Right-handed alpha
Helix 129	AO3	N	493	507	Right-handed alpha
Helix 130	AO4	N	603	617	Right-handed alpha
Helix 131	AO5	N	619	628	Right-handed alpha
Helix 132	AO6	N	631	641	Right-handed alpha
Helix 133	AO7	N	672	682	Right-handed alpha
Helix 134	AO8	N	685	701	Right-handed alpha
Helix 135	AO9	N	859	943	Right-handed alpha
Helix 136	AP1	O	439	446	Right-handed alpha
Helix 137	AP2	O	447	450	Right-handed 310
Helix 138	AP3	O	458	474	Right-handed alpha
Helix 139	AP4	O	482	490	Right-handed alpha
Helix 140	AP5	O	493	507	Right-handed alpha
Helix 141	AP6	O	602	616	Right-handed alpha
Helix 142	AP7	O	619	628	Right-handed alpha
Helix 143	AP8	O	631	641	Right-handed alpha
Helix 144	AP9	O	645	650	Right-handed alpha
Helix 145	AQ1	O	656	661	Right-handed 310
Helix 146	AQ2	O	671	684	Right-handed alpha
Helix 147	AQ3	O	685	705	Right-handed alpha
Helix 148	AQ4	O	709	717	Right-handed alpha
Helix 149	AQ5	O	868	942	Right-handed alpha
Helix 150	AQ6	P	127	131	Right-handed 310
Helix 151	AQ7	P	134	139	Right-handed alpha
Helix 152	AQ8	P	143	174	Right-handed alpha
Helix 153	AQ9	P	298	306	Right-handed alpha
Helix 154	AR1	P	312	326	Right-handed alpha
Helix 155	AR2	P	356	363	Right-handed alpha
Helix 156	AR3	P	400	413	Right-handed alpha
Helix 157	AR4	P	414	447	Right-handed alpha
Helix 158	AR5	P	447	467	Right-handed alpha
Helix 159	AR6	P	472	478	Right-handed alpha
Helix 160	AR7	P	479	485	Right-handed 310
Helix 161	AR8	P	486	501	Right-handed alpha
Helix 162	AR9	Q	186	207	Right-handed alpha
Helix 163	AS1	Q	220	275	Right-handed alpha
Helix 164	AS2	R	14	39	Right-handed alpha
Helix 165	AS3	R	58	62	Right-handed 310
Helix 166	AS4	V	142	161	Right-handed alpha
Helix 167	AS5	V	163	176	Right-handed alpha
Helix 168	AS6	V	180	189	Right-handed alpha
Helix 169	AS7	V	193	208	Right-handed alpha
Helix 170	AS8	W	46	61	Right-handed alpha
Helix 171	AS9	W	67	82	Right-handed alpha
Helix 172	AT1	W	83	105	Right-handed alpha

There are 28 sheets in PDB entry 9RMC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	B	81	82	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	120	first strand
Strand 2	B	46	47	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	99	first strand
Strand 2	G	102	103	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	44	first strand
Strand 2	D	89	90	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	79	first strand
Strand 2	D	54	55	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	103	first strand
Strand 2	F	98	99	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	84	85	first strand
Strand 2	F	81	82	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	119	120	first strand
Strand 2	F	46	47	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	43	44	first strand
Strand 2	H	89	90	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	78	79	first strand
Strand 2	H	54	55	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	35	37	first strand
Strand 2	J	23	27	anti-parallel
Strand 3	J	14	18	anti-parallel
Strand 4	J	120	124	parallel
Strand 5	J	148	153	parallel
Strand 6	J	411	412	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	41	43	first strand
Strand 2	J	83	85	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	88	89	first strand
Strand 2	J	92	93	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	186	187	first strand
Strand 2	J	177	183	anti-parallel
Strand 3	J	193	195	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	186	187	first strand
Strand 2	J	177	183	anti-parallel
Strand 3	J	167	172	anti-parallel
Strand 4	J	348	350	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	280	281	first strand
Strand 2	J	296	297	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	18	21	first strand
Strand 2	K	8	11	anti-parallel
Strand 3	K	103	107	parallel
Strand 4	K	131	136	parallel
Strand 5	K	357	358	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	176	178	first strand
Strand 2	K	160	165	anti-parallel
Strand 3	K	150	155	anti-parallel
Strand 4	K	297	300	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	239	241	first strand
Strand 2	K	247	249	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	1814	1816	first strand
Strand 2	O	424	426	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	17	18	first strand
Strand 2	M	25	28	anti-parallel
Strand 3	M	89	92	anti-parallel
Strand 4	M	53	54	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	186	195	first strand
Strand 2	M	198	207	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	261	270	first strand
Strand 2	M	273	282	anti-parallel
Strand 3	M	352	355	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	424	426	first strand
Strand 2	O	533	535	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	437	439	first strand
Strand 2	R	70	73	anti-parallel
Strand 3	R	63	64	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	523	524	first strand
Strand 2	R	49	52	anti-parallel
Strand 3	R	41	42	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	309	311	first strand
Strand 2	P	294	297	anti-parallel
Strand 3	P	365	366	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	336	338	first strand
Strand 2	P	351	353	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9RMC

Analysis of interatomic Contacts of Structural Units in PDB entry:
9RMC