Analysis of interatomic Contacts of Structural Units in PDB entry:
9RMD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9RMD entry

There is 1 chain in PDB entry 9RMD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA -1ASN 445
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 9RMD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 14Right-handed alpha
Helix 2
AA2
A
24 29Right-handed alpha
Helix 3
AA3
A
50 68Right-handed alpha
Helix 4
AA4
A
78 98Right-handed alpha
Helix 5
AA5
A
145 151Right-handed alpha
Helix 6
AA6
A
160 171Right-handed alpha
Helix 7
AA7
A
171 177Right-handed alpha
Helix 8
AA8
A
179 193Right-handed alpha
Helix 9
AA9
A
193 201Right-handed alpha
Helix 10
AB1
A
217 227Right-handed alpha
Helix 11
AB2
A
259 263Right-handed alpha
Helix 12
AB3
A
269 274Right-handed alpha
Helix 13
AB4
A
295 300Right-handed 310
Helix 14
AB5
A
388 396Right-handed 310
Helix 15
AB6
A
419 427Right-handed alpha
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There are 3 sheets in PDB entry 9RMD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
39 44anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 109first strand
Strand 2
A
154 157anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 258first strand
Strand 2
A
279 283parallel
Strand 3
A
288 293anti-parallel
Strand 4
A
379 385anti-parallel
Strand 5
A
400 405anti-parallel
Strand 6
A
433 436anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il