Analysis of interatomic Contacts of Structural Units in PDB entry:
9RMK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9RMK entry

There are 2 chains in PDB entry 9RMK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 14LYS 604
F
 VAL 1SER 128
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 9RMK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 29Right-handed alpha
Helix 2
AA2
A
29 34Right-handed alpha
Helix 3
AA3
A
44 64Right-handed alpha
Helix 4
AA4
A
72 93Right-handed alpha
Helix 5
AA5
A
97 125Right-handed alpha
Helix 6
AA6
A
126 154Right-handed alpha
Helix 7
AA7
A
155 158Right-handed 310
Helix 8
AA8
A
178 198Right-handed alpha
Helix 9
AA9
A
199 201Right-handed 310
Helix 10
AB1
A
204 218Right-handed alpha
Helix 11
AB2
A
219 221Right-handed 310
Helix 12
AB3
A
225 235Right-handed alpha
Helix 13
AB4
A
235 242Right-handed alpha
Helix 14
AB5
A
248 268Right-handed alpha
Helix 15
AB6
A
269 277Right-handed alpha
Helix 16
AB7
A
283 290Right-handed alpha
Helix 17
AB8
A
295 312Right-handed alpha
Helix 18
AB9
A
324 334Right-handed alpha
Helix 19
AC1
A
351 359Right-handed alpha
Helix 20
AC2
A
359 379Right-handed alpha
Helix 21
AC3
A
384 402Right-handed alpha
Helix 22
AC4
A
409 422Right-handed alpha
Helix 23
AC5
A
433 466Right-handed alpha
Helix 24
AC6
A
475 491Right-handed alpha
Helix 25
AC7
A
494 501Right-handed alpha
Helix 26
AC8
A
502 506Right-handed 310
Helix 27
AC9
A
514 525Right-handed alpha
Helix 28
AD1
A
530 534Right-handed 310
Helix 29
AD2
A
535 543Right-handed alpha
Helix 30
AD3
A
545 560Right-handed alpha
Helix 31
AD4
A
563 572Right-handed alpha
Helix 32
AD5
A
580 592Right-handed alpha
Helix 33
AD6
F
87 91Right-handed 310
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There are 3 sheets in PDB entry 9RMK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
2 6first strand
Strand 2
F
18 25anti-parallel
Strand 3
F
78 83anti-parallel
Strand 4
F
69 73anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
46 51first strand
Strand 2
F
34 38anti-parallel
Strand 3
F
92 99anti-parallel
Strand 4
F
115 116anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
46 51first strand
Strand 2
F
34 38anti-parallel
Strand 3
F
92 99anti-parallel
Strand 4
F
122 124anti-parallel
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