Analysis of interatomic Contacts of Structural Units in PDB entry:
9RMS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9RMS entry

There are 8 chains in PDB entry 9RMS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 419	GLU 843
B	VAL 417	GLU 843
C	ARG 415	GLU 843
D	THR 416	GLU 843
E	GLY 7	ALA 212
F	GLY 7	ALA 212
G	GLY 7	ALA 212
H	GLY 7	ALA 212

There are 82 helices in PDB entry 9RMS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	438	441	Right-handed 310
Helix 2	AA2	A	445	458	Right-handed alpha
Helix 3	AA3	A	486	491	Right-handed alpha
Helix 4	AA4	A	504	509	Right-handed alpha
Helix 5	AA5	A	544	568	Right-handed alpha
Helix 6	AA6	A	569	573	Right-handed 310
Helix 7	AA7	A	596	608	Right-handed alpha
Helix 8	AA8	A	617	652	Right-handed alpha
Helix 9	AA9	A	658	664	Right-handed alpha
Helix 10	AB1	A	675	684	Right-handed alpha
Helix 11	AB2	A	686	699	Right-handed alpha
Helix 12	AB3	A	707	717	Right-handed alpha
Helix 13	AB4	A	727	736	Right-handed alpha
Helix 14	AB5	A	764	778	Right-handed alpha
Helix 15	AB6	A	779	790	Right-handed alpha
Helix 16	AB7	A	815	842	Right-handed alpha
Helix 17	AB8	B	433	437	Right-handed 310
Helix 18	AB9	B	438	441	Right-handed 310
Helix 19	AC1	B	445	459	Right-handed alpha
Helix 20	AC2	B	483	491	Right-handed alpha
Helix 21	AC3	B	504	509	Right-handed alpha
Helix 22	AC4	B	544	569	Right-handed alpha
Helix 23	AC5	B	594	607	Right-handed alpha
Helix 24	AC6	B	617	652	Right-handed alpha
Helix 25	AC7	B	658	663	Right-handed alpha
Helix 26	AC8	B	675	684	Right-handed alpha
Helix 27	AC9	B	686	699	Right-handed alpha
Helix 28	AD1	B	707	718	Right-handed alpha
Helix 29	AD2	B	728	736	Right-handed alpha
Helix 30	AD3	B	764	778	Right-handed alpha
Helix 31	AD4	B	779	790	Right-handed alpha
Helix 32	AD5	B	815	843	Right-handed alpha
Helix 33	AD6	C	433	437	Right-handed 310
Helix 34	AD7	C	438	441	Right-handed 310
Helix 35	AD8	C	445	459	Right-handed alpha
Helix 36	AD9	C	483	491	Right-handed alpha
Helix 37	AE1	C	504	509	Right-handed alpha
Helix 38	AE2	C	544	568	Right-handed alpha
Helix 39	AE3	C	594	608	Right-handed alpha
Helix 40	AE4	C	617	648	Right-handed alpha
Helix 41	AE5	C	675	684	Right-handed alpha
Helix 42	AE6	C	686	699	Right-handed alpha
Helix 43	AE7	C	707	718	Right-handed alpha
Helix 44	AE8	C	728	736	Right-handed alpha
Helix 45	AE9	C	764	778	Right-handed alpha
Helix 46	AF1	C	779	790	Right-handed alpha
Helix 47	AF2	C	815	842	Right-handed alpha
Helix 48	AF3	D	438	441	Right-handed 310
Helix 49	AF4	D	445	459	Right-handed alpha
Helix 50	AF5	D	484	491	Right-handed alpha
Helix 51	AF6	D	504	509	Right-handed alpha
Helix 52	AF7	D	544	569	Right-handed alpha
Helix 53	AF8	D	594	608	Right-handed alpha
Helix 54	AF9	D	617	646	Right-handed alpha
Helix 55	AG1	D	657	664	Right-handed alpha
Helix 56	AG2	D	675	683	Right-handed alpha
Helix 57	AG3	D	686	698	Right-handed alpha
Helix 58	AG4	D	707	718	Right-handed alpha
Helix 59	AG5	D	728	735	Right-handed alpha
Helix 60	AG6	D	764	779	Right-handed alpha
Helix 61	AG7	D	779	790	Right-handed alpha
Helix 62	AG8	D	814	843	Right-handed alpha
Helix 63	AG9	E	8	30	Right-handed alpha
Helix 64	AH1	E	94	105	Right-handed alpha
Helix 65	AH2	E	105	125	Right-handed alpha
Helix 66	AH3	E	132	162	Right-handed alpha
Helix 67	AH4	E	177	211	Right-handed alpha
Helix 68	AH5	F	8	30	Right-handed alpha
Helix 69	AH6	F	95	105	Right-handed alpha
Helix 70	AH7	F	105	128	Right-handed alpha
Helix 71	AH8	F	132	160	Right-handed alpha
Helix 72	AH9	F	177	212	Right-handed alpha
Helix 73	AI1	G	8	30	Right-handed alpha
Helix 74	AI2	G	94	105	Right-handed alpha
Helix 75	AI3	G	105	128	Right-handed alpha
Helix 76	AI4	G	132	160	Right-handed alpha
Helix 77	AI5	G	177	212	Right-handed alpha
Helix 78	AI6	H	8	30	Right-handed alpha
Helix 79	AI7	H	94	105	Right-handed alpha
Helix 80	AI8	H	105	123	Right-handed alpha
Helix 81	AI9	H	132	160	Right-handed alpha
Helix 82	AJ1	H	177	212	Right-handed alpha

There are 24 sheets in PDB entry 9RMS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	420	421	first strand
Strand 2	A	465	466	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	429	430	first strand
Strand 2	A	443	444	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	518	520	first strand
Strand 2	A	752	754	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	524	527	first strand
Strand 2	A	742	745	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	668	670	first strand
Strand 2	A	722	724	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	463	466	first strand
Strand 2	B	418	421	parallel
Strand 3	B	496	497	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	429	430	first strand
Strand 2	B	443	444	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	511	513	first strand
Strand 2	B	757	759	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	518	520	first strand
Strand 2	B	752	754	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	668	670	first strand
Strand 2	B	722	727	parallel
Strand 3	B	522	527	anti-parallel
Strand 4	B	742	745	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	462	466	first strand
Strand 2	C	417	421	parallel
Strand 3	C	496	497	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	429	430	first strand
Strand 2	C	443	444	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	512	513	first strand
Strand 2	C	757	758	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	518	520	first strand
Strand 2	C	752	754	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	668	670	first strand
Strand 2	C	722	727	parallel
Strand 3	C	522	527	anti-parallel
Strand 4	C	742	745	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	417	419	first strand
Strand 2	D	462	464	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	429	430	first strand
Strand 2	D	443	444	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	501	502	first strand
Strand 2	D	752	755	anti-parallel
Strand 3	D	518	520	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	511	513	first strand
Strand 2	D	757	759	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	668	670	first strand
Strand 2	D	722	727	parallel
Strand 3	D	522	527	anti-parallel
Strand 4	D	742	745	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	38	first strand
Strand 2	E	57	61	anti-parallel
Strand 3	E	65	68	anti-parallel
Strand 4	E	77	79	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	77	79	first strand
Strand 2	F	65	68	anti-parallel
Strand 3	F	57	61	anti-parallel
Strand 4	F	34	38	anti-parallel
Strand 5	F	175	176	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	79	first strand
Strand 2	G	65	68	anti-parallel
Strand 3	G	57	61	anti-parallel
Strand 4	G	34	38	anti-parallel
Strand 5	G	175	176	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	77	79	first strand
Strand 2	H	65	68	anti-parallel
Strand 3	H	57	61	anti-parallel
Strand 4	H	34	38	anti-parallel
Strand 5	H	175	176	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9RMS

Analysis of interatomic Contacts of Structural Units in PDB entry:
9RMS