Analysis of interatomic Contacts of Structural Units in PDB entry:
9RN2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9RN2 entry

There are 21 chains in PDB entry 9RN2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 40	GLU 134
B	VAL 22	GLY 103
C	GLY 9	PRO 118
D	SER 33	ALA 125
E	HIS 40	GLU 134
F	LEU 23	GLY 102
G	GLY 9	PRO 118
H	ARG 34	ALA 125
I	ARG 397	ARG 1325
J	GLY 12	GLU 417
K	ASP 2	ARG 372
L	LEU 1659	SER 2285
M	SER 7	THR 381
N	GLU 414	VAL 514
O	HIS 423	LEU 649
P	PRO 473	ALA 509
R	GLY 13	LYS 82
V	ALA 141	VAL 208
W	VAL 41	ARG 113
X	T 9	G 146
Y	C 3	A 140

There are156 helices in PDB entry 9RN2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	58	Right-handed alpha
Helix 2	AA2	A	64	80	Right-handed alpha
Helix 3	AA3	A	86	115	Right-handed alpha
Helix 4	AA4	A	121	133	Right-handed alpha
Helix 5	AA5	B	25	30	Right-handed 310
Helix 6	AA6	B	31	42	Right-handed alpha
Helix 7	AA7	B	50	77	Right-handed alpha
Helix 8	AA8	B	83	94	Right-handed alpha
Helix 9	AA9	C	17	23	Right-handed alpha
Helix 10	AB1	C	27	37	Right-handed alpha
Helix 11	AB2	C	46	74	Right-handed alpha
Helix 12	AB3	C	80	90	Right-handed alpha
Helix 13	AB4	C	91	98	Right-handed alpha
Helix 14	AB5	C	113	117	Right-handed 310
Helix 15	AB6	D	38	50	Right-handed alpha
Helix 16	AB7	D	56	85	Right-handed alpha
Helix 17	AB8	D	91	103	Right-handed alpha
Helix 18	AB9	D	104	124	Right-handed alpha
Helix 19	AC1	E	45	58	Right-handed alpha
Helix 20	AC2	E	64	80	Right-handed alpha
Helix 21	AC3	E	86	115	Right-handed alpha
Helix 22	AC4	E	121	133	Right-handed alpha
Helix 23	AC5	F	25	30	Right-handed 310
Helix 24	AC6	F	31	42	Right-handed alpha
Helix 25	AC7	F	50	77	Right-handed alpha
Helix 26	AC8	F	83	94	Right-handed alpha
Helix 27	AC9	G	17	23	Right-handed alpha
Helix 28	AD1	G	27	37	Right-handed alpha
Helix 29	AD2	G	46	74	Right-handed alpha
Helix 30	AD3	G	80	91	Right-handed alpha
Helix 31	AD4	G	91	98	Right-handed alpha
Helix 32	AD5	G	113	117	Right-handed 310
Helix 33	AD6	H	38	50	Right-handed alpha
Helix 34	AD7	H	56	85	Right-handed alpha
Helix 35	AD8	H	91	103	Right-handed alpha
Helix 36	AD9	H	104	125	Right-handed alpha
Helix 37	AE1	I	398	409	Right-handed alpha
Helix 38	AE2	I	409	429	Right-handed alpha
Helix 39	AE3	I	468	509	Right-handed alpha
Helix 40	AE4	I	757	770	Right-handed alpha
Helix 41	AE5	I	784	798	Right-handed alpha
Helix 42	AE6	I	812	826	Right-handed alpha
Helix 43	AE7	I	838	844	Right-handed alpha
Helix 44	AE8	I	846	850	Right-handed 310
Helix 45	AE9	I	862	866	Right-handed 310
Helix 46	AF1	I	891	900	Right-handed alpha
Helix 47	AF2	I	917	925	Right-handed alpha
Helix 48	AF3	I	926	928	Right-handed 310
Helix 49	AF4	I	931	939	Right-handed alpha
Helix 50	AF5	I	972	976	Right-handed 310
Helix 51	AF6	I	1001	1014	Right-handed alpha
Helix 52	AF7	I	1039	1048	Right-handed alpha
Helix 53	AF8	I	1049	1051	Right-handed 310
Helix 54	AF9	I	1052	1059	Right-handed alpha
Helix 55	AG1	I	1075	1079	Right-handed alpha
Helix 56	AG2	I	1079	1095	Right-handed alpha
Helix 57	AG3	I	1107	1120	Right-handed alpha
Helix 58	AG4	I	1179	1188	Right-handed alpha
Helix 59	AG5	I	1309	1325	Right-handed alpha
Helix 60	AG6	J	70	77	Right-handed alpha
Helix 61	AG7	J	95	109	Right-handed alpha
Helix 62	AG8	J	129	143	Right-handed alpha
Helix 63	AG9	J	154	162	Right-handed alpha
Helix 64	AH1	J	189	192	Right-handed 310
Helix 65	AH2	J	198	214	Right-handed alpha
Helix 66	AH3	J	247	267	Right-handed alpha
Helix 67	AH4	J	299	307	Right-handed alpha
Helix 68	AH5	J	308	310	Right-handed 310
Helix 69	AH6	J	324	335	Right-handed alpha
Helix 70	AH7	J	340	346	Right-handed alpha
Helix 71	AH8	J	352	357	Right-handed 310
Helix 72	AH9	J	359	372	Right-handed alpha
Helix 73	AI1	J	381	390	Right-handed 310
Helix 74	AI2	J	391	401	Right-handed alpha
Helix 75	AI3	J	403	409	Right-handed alpha
Helix 76	AI4	K	3	7	Right-handed alpha
Helix 77	AI5	K	80	91	Right-handed alpha
Helix 78	AI6	K	112	124	Right-handed alpha
Helix 79	AI7	K	137	145	Right-handed alpha
Helix 80	AI8	K	171	175	Right-handed 310
Helix 81	AI9	K	181	197	Right-handed alpha
Helix 82	AJ1	K	202	216	Right-handed alpha
Helix 83	AJ2	K	223	232	Right-handed alpha
Helix 84	AJ3	K	252	257	Right-handed alpha
Helix 85	AJ4	K	258	262	Right-handed 310
Helix 86	AJ5	K	263	268	Right-handed alpha
Helix 87	AJ6	K	273	285	Right-handed alpha
Helix 88	AJ7	K	288	295	Right-handed alpha
Helix 89	AJ8	K	301	306	Right-handed 310
Helix 90	AJ9	K	308	321	Right-handed alpha
Helix 91	AK1	K	334	336	Right-handed 310
Helix 92	AK2	K	337	347	Right-handed alpha
Helix 93	AK3	K	349	354	Right-handed alpha
Helix 94	AK4	K	359	366	Right-handed alpha
Helix 95	AK5	K	367	372	Right-handed 310
Helix 96	AK6	L	1660	1665	Right-handed alpha
Helix 97	AK7	L	1668	1678	Right-handed alpha
Helix 98	AK8	L	1680	1697	Right-handed alpha
Helix 99	AK9	L	1700	1704	Right-handed 310
Helix 100	AL1	L	1711	1729	Right-handed alpha
Helix 101	AL2	L	1731	1735	Right-handed 310
Helix 102	AL3	L	1740	1744	Right-handed 310
Helix 103	AL4	L	1840	1846	Right-handed alpha
Helix 104	AL5	L	1973	1992	Right-handed alpha
Helix 105	AL6	L	1996	2003	Right-handed alpha
Helix 106	AL7	L	2004	2016	Right-handed alpha
Helix 107	AL8	L	2051	2068	Right-handed alpha
Helix 108	AL9	L	2077	2093	Right-handed alpha
Helix 109	AM1	L	2115	2126	Right-handed alpha
Helix 110	AM2	L	2128	2137	Right-handed alpha
Helix 111	AM3	L	2140	2158	Right-handed alpha
Helix 112	AM4	L	2160	2178	Right-handed alpha
Helix 113	AM5	L	2178	2187	Right-handed alpha
Helix 114	AM6	L	2190	2210	Right-handed alpha
Helix 115	AM7	L	2227	2243	Right-handed alpha
Helix 116	AM8	L	2244	2249	Right-handed 310
Helix 117	AM9	L	2254	2264	Right-handed alpha
Helix 118	AN1	L	2268	2284	Right-handed alpha
Helix 119	AN2	M	29	36	Right-handed alpha
Helix 120	AN3	M	41	47	Right-handed alpha
Helix 121	AN4	M	56	66	Right-handed alpha
Helix 122	AN5	M	79	84	Right-handed 310
Helix 123	AN6	M	93	100	Right-handed alpha
Helix 124	AN7	M	173	181	Right-handed alpha
Helix 125	AN8	M	214	226	Right-handed alpha
Helix 126	AN9	M	229	247	Right-handed alpha
Helix 127	AO1	M	289	302	Right-handed alpha
Helix 128	AO2	M	304	326	Right-handed alpha
Helix 129	AO3	M	342	350	Right-handed alpha
Helix 130	AO4	M	357	381	Right-handed alpha
Helix 131	AO5	N	427	433	Right-handed 310
Helix 132	AO6	N	440	446	Right-handed alpha
Helix 133	AO7	N	447	450	Right-handed 310
Helix 134	AO8	N	458	475	Right-handed alpha
Helix 135	AO9	N	482	490	Right-handed alpha
Helix 136	AP1	N	493	507	Right-handed alpha
Helix 137	AP2	O	439	446	Right-handed alpha
Helix 138	AP3	O	447	450	Right-handed 310
Helix 139	AP4	O	458	474	Right-handed alpha
Helix 140	AP5	O	482	490	Right-handed alpha
Helix 141	AP6	O	493	507	Right-handed alpha
Helix 142	AP7	O	602	614	Right-handed alpha
Helix 143	AP8	O	619	628	Right-handed alpha
Helix 144	AP9	O	631	641	Right-handed alpha
Helix 145	AQ1	P	474	478	Right-handed alpha
Helix 146	AQ2	P	479	485	Right-handed 310
Helix 147	AQ3	P	486	509	Right-handed alpha
Helix 148	AQ4	R	14	39	Right-handed alpha
Helix 149	AQ5	R	58	62	Right-handed 310
Helix 150	AQ6	V	142	160	Right-handed alpha
Helix 151	AQ7	V	163	176	Right-handed alpha
Helix 152	AQ8	V	180	190	Right-handed alpha
Helix 153	AQ9	V	193	206	Right-handed alpha
Helix 154	AR1	W	46	61	Right-handed alpha
Helix 155	AR2	W	67	82	Right-handed alpha
Helix 156	AR3	W	83	105	Right-handed alpha

There are 27 sheets in PDB entry 9RN2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	B	81	82	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	120	first strand
Strand 2	B	46	47	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	99	first strand
Strand 2	G	102	103	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	44	first strand
Strand 2	D	89	90	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	79	first strand
Strand 2	D	54	55	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	103	first strand
Strand 2	F	98	99	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	84	85	first strand
Strand 2	F	81	82	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	119	120	first strand
Strand 2	F	46	47	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	43	44	first strand
Strand 2	H	89	90	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	78	79	first strand
Strand 2	H	54	55	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	992	998	first strand
Strand 2	I	1200	1206	parallel
Strand 3	I	1170	1173	parallel
Strand 4	I	1099	1103	parallel
Strand 5	I	1151	1155	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	35	37	first strand
Strand 2	J	23	27	anti-parallel
Strand 3	J	14	18	anti-parallel
Strand 4	J	120	124	parallel
Strand 5	J	148	153	parallel
Strand 6	J	411	412	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	41	43	first strand
Strand 2	J	83	85	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	88	89	first strand
Strand 2	J	92	93	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	186	187	first strand
Strand 2	J	177	183	anti-parallel
Strand 3	J	193	195	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	186	187	first strand
Strand 2	J	177	183	anti-parallel
Strand 3	J	167	172	anti-parallel
Strand 4	J	348	350	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	280	281	first strand
Strand 2	J	296	297	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	18	21	first strand
Strand 2	K	8	11	anti-parallel
Strand 3	K	103	107	parallel
Strand 4	K	131	136	parallel
Strand 5	K	357	358	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	176	178	first strand
Strand 2	K	160	165	anti-parallel
Strand 3	K	150	155	anti-parallel
Strand 4	K	297	300	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	239	241	first strand
Strand 2	K	247	249	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	1814	1816	first strand
Strand 2	O	424	426	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	17	18	first strand
Strand 2	M	25	28	anti-parallel
Strand 3	M	89	92	anti-parallel
Strand 4	M	53	54	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	186	195	first strand
Strand 2	M	198	207	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	261	270	first strand
Strand 2	M	273	282	anti-parallel
Strand 3	M	352	355	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	424	426	first strand
Strand 2	O	533	535	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	437	439	first strand
Strand 2	R	70	73	anti-parallel
Strand 3	R	63	64	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	523	524	first strand
Strand 2	R	49	52	anti-parallel
Strand 3	R	41	42	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9RN2

Analysis of interatomic Contacts of Structural Units in PDB entry:
9RN2