Analysis of interatomic Contacts of Structural Units in PDB entry:
9RN4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9RN4 entry

There are 8 chains in PDB entry 9RN4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 415	ARG 846
B	ARG 415	ALA 844
C	ARG 415	LYS 845
D	ARG 415	ARG 846
E	GLY 7	ALA 212
F	GLY 7	ALA 212
G	GLY 7	ALA 212
H	GLY 7	ALA 212

There are 94 helices in PDB entry 9RN4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	433	437	Right-handed 310
Helix 2	AA2	A	438	441	Right-handed 310
Helix 3	AA3	A	445	459	Right-handed alpha
Helix 4	AA4	A	483	491	Right-handed alpha
Helix 5	AA5	A	504	509	Right-handed alpha
Helix 6	AA6	A	544	568	Right-handed alpha
Helix 7	AA7	A	594	607	Right-handed alpha
Helix 8	AA8	A	617	649	Right-handed alpha
Helix 9	AA9	A	650	652	Right-handed 310
Helix 10	AB1	A	657	663	Right-handed alpha
Helix 11	AB2	A	675	684	Right-handed alpha
Helix 12	AB3	A	686	699	Right-handed alpha
Helix 13	AB4	A	707	718	Right-handed alpha
Helix 14	AB5	A	728	736	Right-handed alpha
Helix 15	AB6	A	764	778	Right-handed alpha
Helix 16	AB7	A	779	790	Right-handed alpha
Helix 17	AB8	A	815	832	Right-handed alpha
Helix 18	AB9	A	832	846	Right-handed alpha
Helix 19	AC1	B	433	437	Right-handed 310
Helix 20	AC2	B	438	441	Right-handed 310
Helix 21	AC3	B	445	459	Right-handed alpha
Helix 22	AC4	B	483	491	Right-handed alpha
Helix 23	AC5	B	504	509	Right-handed alpha
Helix 24	AC6	B	537	541	Right-handed 310
Helix 25	AC7	B	544	568	Right-handed alpha
Helix 26	AC8	B	596	607	Right-handed alpha
Helix 27	AC9	B	619	649	Right-handed alpha
Helix 28	AD1	B	657	663	Right-handed alpha
Helix 29	AD2	B	675	684	Right-handed alpha
Helix 30	AD3	B	686	699	Right-handed alpha
Helix 31	AD4	B	707	718	Right-handed alpha
Helix 32	AD5	B	728	736	Right-handed alpha
Helix 33	AD6	B	764	778	Right-handed alpha
Helix 34	AD7	B	779	790	Right-handed alpha
Helix 35	AD8	B	814	844	Right-handed alpha
Helix 36	AD9	C	433	437	Right-handed 310
Helix 37	AE1	C	438	441	Right-handed 310
Helix 38	AE2	C	445	459	Right-handed alpha
Helix 39	AE3	C	483	491	Right-handed alpha
Helix 40	AE4	C	504	509	Right-handed alpha
Helix 41	AE5	C	537	541	Right-handed 310
Helix 42	AE6	C	544	548	Right-handed 310
Helix 43	AE7	C	550	568	Right-handed alpha
Helix 44	AE8	C	594	606	Right-handed alpha
Helix 45	AE9	C	617	627	Right-handed alpha
Helix 46	AF1	C	631	648	Right-handed alpha
Helix 47	AF2	C	657	663	Right-handed alpha
Helix 48	AF3	C	675	684	Right-handed alpha
Helix 49	AF4	C	686	699	Right-handed alpha
Helix 50	AF5	C	707	718	Right-handed alpha
Helix 51	AF6	C	728	736	Right-handed alpha
Helix 52	AF7	C	764	778	Right-handed alpha
Helix 53	AF8	C	779	790	Right-handed alpha
Helix 54	AF9	C	815	820	Right-handed alpha
Helix 55	AG1	C	820	845	Right-handed alpha
Helix 56	AG2	D	433	437	Right-handed 310
Helix 57	AG3	D	438	441	Right-handed 310
Helix 58	AG4	D	445	459	Right-handed alpha
Helix 59	AG5	D	483	491	Right-handed alpha
Helix 60	AG6	D	504	509	Right-handed alpha
Helix 61	AG7	D	544	550	Right-handed alpha
Helix 62	AG8	D	551	568	Right-handed alpha
Helix 63	AG9	D	594	607	Right-handed alpha
Helix 64	AH1	D	617	648	Right-handed alpha
Helix 65	AH2	D	657	663	Right-handed alpha
Helix 66	AH3	D	675	684	Right-handed alpha
Helix 67	AH4	D	686	699	Right-handed alpha
Helix 68	AH5	D	707	718	Right-handed alpha
Helix 69	AH6	D	728	736	Right-handed alpha
Helix 70	AH7	D	764	778	Right-handed alpha
Helix 71	AH8	D	779	790	Right-handed alpha
Helix 72	AH9	D	810	815	Right-handed alpha
Helix 73	AI1	D	816	846	Right-handed alpha
Helix 74	AI2	E	8	30	Right-handed alpha
Helix 75	AI3	E	94	105	Right-handed alpha
Helix 76	AI4	E	105	127	Right-handed alpha
Helix 77	AI5	E	132	163	Right-handed alpha
Helix 78	AI6	E	177	212	Right-handed alpha
Helix 79	AI7	F	8	30	Right-handed alpha
Helix 80	AI8	F	93	105	Right-handed alpha
Helix 81	AI9	F	105	128	Right-handed alpha
Helix 82	AJ1	F	132	153	Right-handed alpha
Helix 83	AJ2	F	154	159	Right-handed alpha
Helix 84	AJ3	F	177	212	Right-handed alpha
Helix 85	AJ4	G	8	30	Right-handed alpha
Helix 86	AJ5	G	94	105	Right-handed alpha
Helix 87	AJ6	G	105	128	Right-handed alpha
Helix 88	AJ7	G	132	161	Right-handed alpha
Helix 89	AJ8	G	177	212	Right-handed alpha
Helix 90	AJ9	H	8	30	Right-handed alpha
Helix 91	AK1	H	95	100	Right-handed alpha
Helix 92	AK2	H	105	129	Right-handed alpha
Helix 93	AK3	H	132	163	Right-handed alpha
Helix 94	AK4	H	177	212	Right-handed alpha

There are 25 sheets in PDB entry 9RN4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	462	466	first strand
Strand 2	A	417	421	parallel
Strand 3	A	496	497	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	429	430	first strand
Strand 2	A	443	444	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	511	513	first strand
Strand 2	A	757	759	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	518	520	first strand
Strand 2	A	752	754	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	668	670	first strand
Strand 2	A	722	727	parallel
Strand 3	A	522	526	anti-parallel
Strand 4	A	743	745	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	462	466	first strand
Strand 2	B	417	421	parallel
Strand 3	B	496	497	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	429	430	first strand
Strand 2	B	443	444	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	511	513	first strand
Strand 2	B	757	759	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	518	520	first strand
Strand 2	B	752	754	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	668	670	first strand
Strand 2	B	722	727	parallel
Strand 3	B	522	527	anti-parallel
Strand 4	B	742	745	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	462	466	first strand
Strand 2	C	417	421	parallel
Strand 3	C	496	497	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	429	430	first strand
Strand 2	C	443	444	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	511	513	first strand
Strand 2	C	757	759	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	518	520	first strand
Strand 2	C	752	754	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	668	670	first strand
Strand 2	C	722	727	parallel
Strand 3	C	522	527	anti-parallel
Strand 4	C	742	745	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	462	466	first strand
Strand 2	D	417	421	parallel
Strand 3	D	496	497	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	429	430	first strand
Strand 2	D	443	444	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	511	513	first strand
Strand 2	D	757	759	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	518	520	first strand
Strand 2	D	752	754	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	668	670	first strand
Strand 2	D	722	727	parallel
Strand 3	D	522	527	anti-parallel
Strand 4	D	742	745	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	57	61	first strand
Strand 2	E	34	38	anti-parallel
Strand 3	E	174	176	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	65	67	first strand
Strand 2	E	77	79	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	38	first strand
Strand 2	F	57	60	anti-parallel
Strand 3	F	65	68	anti-parallel
Strand 4	F	77	79	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	79	first strand
Strand 2	G	65	68	anti-parallel
Strand 3	G	57	61	anti-parallel
Strand 4	G	34	38	anti-parallel
Strand 5	G	175	176	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	77	79	first strand
Strand 2	H	65	68	anti-parallel
Strand 3	H	57	61	anti-parallel
Strand 4	H	34	38	anti-parallel
Strand 5	H	175	176	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9RN4

Analysis of interatomic Contacts of Structural Units in PDB entry:
9RN4