Analysis of interatomic Contacts of Structural Units in PDB entry:
9RNH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9RNH entry

There are 8 chains in PDB entry 9RNH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 532	GLU 908
B	LYS 533	GLU 843
C	LYS 533	GLU 843
D	SER 532	GLU 908
E	GLY 7	ALA 212
F	GLY 7	ALA 212
G	GLY 7	ALA 212
H	GLY 7	ALA 212

There are 36 helices in PDB entry 9RNH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	544	568	Right-handed alpha
Helix 2	AA2	A	596	607	Right-handed alpha
Helix 3	AA3	A	617	652	Right-handed alpha
Helix 4	AA4	A	815	907	Right-handed alpha
Helix 5	AA5	B	544	569	Right-handed alpha
Helix 6	AA6	B	594	607	Right-handed alpha
Helix 7	AA7	B	617	651	Right-handed alpha
Helix 8	AA8	B	815	843	Right-handed alpha
Helix 9	AA9	C	544	568	Right-handed alpha
Helix 10	AB1	C	594	608	Right-handed alpha
Helix 11	AB2	C	617	648	Right-handed alpha
Helix 12	AB3	C	815	841	Right-handed alpha
Helix 13	AB4	D	544	569	Right-handed alpha
Helix 14	AB5	D	594	607	Right-handed alpha
Helix 15	AB6	D	617	646	Right-handed alpha
Helix 16	AB7	D	814	908	Right-handed alpha
Helix 17	AB8	E	8	30	Right-handed alpha
Helix 18	AB9	E	94	105	Right-handed alpha
Helix 19	AC1	E	105	125	Right-handed alpha
Helix 20	AC2	E	132	162	Right-handed alpha
Helix 21	AC3	E	177	211	Right-handed alpha
Helix 22	AC4	F	8	30	Right-handed alpha
Helix 23	AC5	F	95	105	Right-handed alpha
Helix 24	AC6	F	105	128	Right-handed alpha
Helix 25	AC7	F	132	161	Right-handed alpha
Helix 26	AC8	F	177	212	Right-handed alpha
Helix 27	AC9	G	8	30	Right-handed alpha
Helix 28	AD1	G	94	105	Right-handed alpha
Helix 29	AD2	G	105	128	Right-handed alpha
Helix 30	AD3	G	132	160	Right-handed alpha
Helix 31	AD4	G	177	212	Right-handed alpha
Helix 32	AD5	H	8	30	Right-handed alpha
Helix 33	AD6	H	94	105	Right-handed alpha
Helix 34	AD7	H	105	123	Right-handed alpha
Helix 35	AD8	H	132	160	Right-handed alpha
Helix 36	AD9	H	177	212	Right-handed alpha

There are 4 sheets in PDB entry 9RNH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	38	first strand
Strand 2	E	57	61	anti-parallel
Strand 3	E	65	68	anti-parallel
Strand 4	E	77	79	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	77	79	first strand
Strand 2	F	65	68	anti-parallel
Strand 3	F	57	61	anti-parallel
Strand 4	F	34	38	anti-parallel
Strand 5	F	175	176	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	79	first strand
Strand 2	G	65	68	anti-parallel
Strand 3	G	57	61	anti-parallel
Strand 4	G	34	38	anti-parallel
Strand 5	G	175	176	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	77	79	first strand
Strand 2	H	65	68	anti-parallel
Strand 3	H	58	61	anti-parallel
Strand 4	H	34	37	anti-parallel
Strand 5	H	175	176	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9RNH

Analysis of interatomic Contacts of Structural Units in PDB entry:
9RNH