Analysis of interatomic Contacts of Structural Units in PDB entry:
9RNJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9RNJ entry

There are 2 chains in PDB entry 9RNJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 LYS 43SER 1116
A
 LYS 43SER 1116
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 76 helices in PDB entry 9RNJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
57 69Right-handed alpha
Helix 2
AA2
B
98 103Right-handed alpha
Helix 3
AA3
B
103 112Right-handed alpha
Helix 4
AA4
B
113 117Right-handed 310
Helix 5
AA5
B
119 128Right-handed alpha
Helix 6
AA6
B
131 155Right-handed alpha
Helix 7
AA7
B
163 173Right-handed alpha
Helix 8
AA8
B
173 206Right-handed alpha
Helix 9
AA9
B
219 221Right-handed 310
Helix 10
AB1
B
222 247Right-handed alpha
Helix 11
AB2
B
247 278Right-handed alpha
Helix 12
AB3
B
315 322Right-handed alpha
Helix 13
AB4
B
332 338Right-handed alpha
Helix 14
AB5
B
354 358Right-handed 310
Helix 15
AB6
B
399 408Right-handed alpha
Helix 16
AB7
B
409 412Right-handed 310
Helix 17
AB8
B
415 420Right-handed alpha
Helix 18
AB9
B
426 457Right-handed alpha
Helix 19
AC1
B
458 464Right-handed alpha
Helix 20
AC2
B
476 480Right-handed 310
Helix 21
AC3
B
483 517Right-handed alpha
Helix 22
AC4
B
519 527Right-handed 310
Helix 23
AC5
B
536 552Right-handed alpha
Helix 24
AC6
B
557 583Right-handed alpha
Helix 25
AC7
B
597 612Right-handed alpha
Helix 26
AC8
B
614 634Right-handed alpha
Helix 27
AC9
B
643 660Right-handed alpha
Helix 28
AD1
B
688 699Right-handed alpha
Helix 29
AD2
B
700 702Right-handed 310
Helix 30
AD3
B
714 736Right-handed alpha
Helix 31
AD4
B
749 760Right-handed alpha
Helix 32
AD5
B
778 782Right-handed 310
Helix 33
AD6
B
785 801Right-handed alpha
Helix 34
AD7
B
835 848Right-handed alpha
Helix 35
AD8
B
867 882Right-handed alpha
Helix 36
AD9
B
1046 1065Right-handed alpha
Helix 37
AE1
B
1080 1082Right-handed 310
Helix 38
AE2
B
1083 1095Right-handed alpha
Helix 39
AE3
A
57 69Right-handed alpha
Helix 40
AE4
A
98 103Right-handed alpha
Helix 41
AE5
A
103 112Right-handed alpha
Helix 42
AE6
A
113 117Right-handed 310
Helix 43
AE7
A
119 128Right-handed alpha
Helix 44
AE8
A
131 155Right-handed alpha
Helix 45
AE9
A
163 173Right-handed alpha
Helix 46
AF1
A
173 206Right-handed alpha
Helix 47
AF2
A
219 221Right-handed 310
Helix 48
AF3
A
222 247Right-handed alpha
Helix 49
AF4
A
247 278Right-handed alpha
Helix 50
AF5
A
315 322Right-handed alpha
Helix 51
AF6
A
332 338Right-handed alpha
Helix 52
AF7
A
354 358Right-handed 310
Helix 53
AF8
A
399 408Right-handed alpha
Helix 54
AF9
A
409 412Right-handed 310
Helix 55
AG1
A
415 420Right-handed alpha
Helix 56
AG2
A
426 457Right-handed alpha
Helix 57
AG3
A
458 464Right-handed alpha
Helix 58
AG4
A
476 480Right-handed 310
Helix 59
AG5
A
483 517Right-handed alpha
Helix 60
AG6
A
519 527Right-handed 310
Helix 61
AG7
A
536 552Right-handed alpha
Helix 62
AG8
A
557 583Right-handed alpha
Helix 63
AG9
A
597 612Right-handed alpha
Helix 64
AH1
A
614 634Right-handed alpha
Helix 65
AH2
A
643 660Right-handed alpha
Helix 66
AH3
A
688 699Right-handed alpha
Helix 67
AH4
A
700 702Right-handed 310
Helix 68
AH5
A
714 736Right-handed alpha
Helix 69
AH6
A
749 760Right-handed alpha
Helix 70
AH7
A
778 782Right-handed 310
Helix 71
AH8
A
785 801Right-handed alpha
Helix 72
AH9
A
835 848Right-handed alpha
Helix 73
AI1
A
867 882Right-handed alpha
Helix 74
AI2
A
1046 1065Right-handed alpha
Helix 75
AI3
A
1080 1082Right-handed 310
Helix 76
AI4
A
1083 1095Right-handed alpha
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There are 4 sheets in PDB entry 9RNJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
285 289first strand
Strand 2
B
340 344anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
741 742first strand
Strand 2
B
706 708parallel
Strand 3
B
675 677parallel
Strand 4
B
770 774parallel
Strand 5
B
804 809parallel
Strand 6
B
1101 1104anti-parallel
Strand 7
B
1070 1072parallel
Strand 8
B
827 830parallel
Strand 9
B
857 862parallel
Strand 10
B
889 892parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 289first strand
Strand 2
A
340 344anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
741 742first strand
Strand 2
A
706 708parallel
Strand 3
A
675 677parallel
Strand 4
A
770 774parallel
Strand 5
A
804 809parallel
Strand 6
A
1101 1104anti-parallel
Strand 7
A
1070 1072parallel
Strand 8
A
827 830parallel
Strand 9
A
857 862parallel
Strand 10
A
889 892parallel
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