Analysis of interatomic Contacts of Structural Units in PDB entry:
9RO8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9RO8 entry

There are 2 chains in PDB entry 9RO8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 252ARG 385
B
 PRO 250ARG 385
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 9RO8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
255 260Right-handed alpha
Helix 2
AA2
A
261 264Right-handed 310
Helix 3
AA3
A
282 293Right-handed alpha
Helix 4
AA4
A
297 305Right-handed alpha
Helix 5
AA5
A
319 334Right-handed alpha
Helix 6
AA6
A
350 355Right-handed alpha
Helix 7
AA7
A
355 362Right-handed alpha
Helix 8
AA8
B
255 264Right-handed alpha
Helix 9
AA9
B
282 293Right-handed alpha
Helix 10
AB1
B
297 305Right-handed alpha
Helix 11
AB2
B
316 334Right-handed alpha
Helix 12
AB3
B
351 355Right-handed alpha
Helix 13
AB4
B
355 362Right-handed alpha
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There are 4 sheets in PDB entry 9RO8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 274first strand
Strand 2
A
336 342parallel
Strand 3
A
366 372parallel
Strand 4
A
379 384anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 277first strand
Strand 2
A
280 281anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
271 274first strand
Strand 2
B
336 342parallel
Strand 3
B
366 372parallel
Strand 4
B
379 384anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
276 277first strand
Strand 2
B
280 281anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il