Analysis of interatomic Contacts of Structural Units in PDB entry:
9ROD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9ROD entry

There are 4 chains in PDB entry 9ROD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 30SER 365
A
 LYS 367TYR 1013
B
 LYS 22SER 303
C
 GLU 25ARG 58
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 9ROD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 45Right-handed alpha
Helix 2
AA2
A
54 66Right-handed alpha
Helix 3
AA3
A
80 87Right-handed alpha
Helix 4
AA4
A
90 112Right-handed alpha
Helix 5
AA5
A
117 149Right-handed alpha
Helix 6
AA6
A
255 265Right-handed alpha
Helix 7
AA7
A
272 303Right-handed alpha
Helix 8
AA8
A
306 321Right-handed alpha
Helix 9
AA9
A
325 344Right-handed alpha
Helix 10
AB1
A
350 359Right-handed alpha
Helix 11
AB2
A
366 371Right-handed alpha
Helix 12
AB3
A
405 419Right-handed alpha
Helix 13
AB4
A
431 435Right-handed 310
Helix 14
AB5
A
440 455Right-handed alpha
Helix 15
AB6
A
457 463Right-handed alpha
Helix 16
AB7
A
500 507Right-handed alpha
Helix 17
AB8
A
521 538Right-handed alpha
Helix 18
AB9
A
587 599Right-handed alpha
Helix 19
AC1
A
610 622Right-handed alpha
Helix 20
AC2
A
630 639Right-handed alpha
Helix 21
AC3
A
641 645Right-handed 310
Helix 22
AC4
A
646 650Right-handed 310
Helix 23
AC5
A
664 675Right-handed alpha
Helix 24
AC6
A
684 698Right-handed alpha
Helix 25
AC7
A
708 710Right-handed 310
Helix 26
AC8
A
711 718Right-handed alpha
Helix 27
AC9
A
729 735Right-handed alpha
Helix 28
AD1
A
745 772Right-handed alpha
Helix 29
AD2
A
772 786Right-handed alpha
Helix 30
AD3
A
793 805Right-handed alpha
Helix 31
AD4
A
806 814Right-handed alpha
Helix 32
AD5
A
820 824Right-handed 310
Helix 33
AD6
A
836 845Right-handed alpha
Helix 34
AD7
A
846 867Right-handed alpha
Helix 35
AD8
A
869 874Right-handed 310
Helix 36
AD9
A
876 882Right-handed alpha
Helix 37
AE1
A
897 927Right-handed alpha
Helix 38
AE2
A
933 938Right-handed alpha
Helix 39
AE3
A
941 961Right-handed alpha
Helix 40
AE4
A
963 968Right-handed alpha
Helix 41
AE5
A
974 980Right-handed 310
Helix 42
AE6
A
981 1002Right-handed alpha
Helix 43
AE7
A
1005 1012Right-handed alpha
Helix 44
AE8
B
28 61Right-handed alpha
Helix 45
AE9
B
94 97Right-handed 310
Helix 46
AF1
B
98 111Right-handed alpha
Helix 47
AF2
B
112 118Right-handed 310
Helix 48
AF3
B
152 157Right-handed 310
Helix 49
AF4
B
204 206Right-handed 310
Helix 50
AF5
B
241 243Right-handed 310
Helix 51
AF6
C
32 58Right-handed alpha
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There are 9 sheets in PDB entry 9ROD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 171first strand
Strand 2
A
158 163anti-parallel
Strand 3
A
180 183anti-parallel
Strand 4
A
238 250anti-parallel
Strand 5
A
192 203anti-parallel
Strand 6
A
215 216anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 188first strand
Strand 2
A
238 250anti-parallel
Strand 3
A
192 203anti-parallel
Strand 4
A
232 233anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 348first strand
Strand 2
A
738 740anti-parallel
Strand 3
A
720 724parallel
Strand 4
A
702 706parallel
Strand 5
A
362 365parallel
Strand 6
A
602 606parallel
Strand 7
A
677 681parallel
Strand 8
A
652 656parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 389first strand
Strand 2
A
377 383anti-parallel
Strand 3
A
573 582anti-parallel
Strand 4
A
541 550anti-parallel
Strand 5
A
493 499anti-parallel
Strand 6
A
478 485anti-parallel
Strand 7
A
464 470anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 389first strand
Strand 2
A
377 383anti-parallel
Strand 3
A
573 582anti-parallel
Strand 4
A
508 513parallel
Strand 5
A
516 518anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
888 889first strand
Strand 2
A
895 896anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 79first strand
Strand 2
B
175 180anti-parallel
Strand 3
B
259 262anti-parallel
Strand 4
B
228 230anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 90first strand
Strand 2
B
296 301parallel
Strand 3
B
272 275anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
237 239first strand
Strand 2
B
208 212anti-parallel
Strand 3
B
277 278anti-parallel
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