Analysis of interatomic Contacts of Structural Units in PDB entry:
9ROE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9ROE entry

There are 4 chains in PDB entry 9ROE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 19SER 365
A
 LYS 367TYR 1013
B
 SER 19SER 303
C
 ASP 27ARG 58
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 9ROE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 27Right-handed alpha
Helix 2
AA2
A
37 45Right-handed alpha
Helix 3
AA3
A
54 65Right-handed alpha
Helix 4
AA4
A
78 80Right-handed 310
Helix 5
AA5
A
81 88Right-handed alpha
Helix 6
AA6
A
89 109Right-handed alpha
Helix 7
AA7
A
114 117Right-handed 310
Helix 8
AA8
A
118 151Right-handed alpha
Helix 9
AA9
A
173 175Right-handed 310
Helix 10
AB1
A
251 254Right-handed 310
Helix 11
AB2
A
255 266Right-handed alpha
Helix 12
AB3
A
272 304Right-handed alpha
Helix 13
AB4
A
306 322Right-handed alpha
Helix 14
AB5
A
324 343Right-handed alpha
Helix 15
AB6
A
350 354Right-handed 310
Helix 16
AB7
A
355 360Right-handed alpha
Helix 17
AB8
A
366 371Right-handed alpha
Helix 18
AB9
A
405 418Right-handed alpha
Helix 19
AC1
A
440 454Right-handed alpha
Helix 20
AC2
A
456 464Right-handed alpha
Helix 21
AC3
A
500 507Right-handed alpha
Helix 22
AC4
A
521 538Right-handed alpha
Helix 23
AC5
A
588 599Right-handed alpha
Helix 24
AC6
A
610 622Right-handed alpha
Helix 25
AC7
A
630 639Right-handed alpha
Helix 26
AC8
A
646 650Right-handed 310
Helix 27
AC9
A
657 663Right-handed alpha
Helix 28
AD1
A
664 674Right-handed alpha
Helix 29
AD2
A
684 698Right-handed alpha
Helix 30
AD3
A
711 718Right-handed alpha
Helix 31
AD4
A
729 736Right-handed alpha
Helix 32
AD5
A
745 772Right-handed alpha
Helix 33
AD6
A
772 786Right-handed alpha
Helix 34
AD7
A
793 802Right-handed alpha
Helix 35
AD8
A
805 812Right-handed alpha
Helix 36
AD9
A
813 815Right-handed 310
Helix 37
AE1
A
836 846Right-handed alpha
Helix 38
AE2
A
846 867Right-handed alpha
Helix 39
AE3
A
869 873Right-handed 310
Helix 40
AE4
A
876 881Right-handed alpha
Helix 41
AE5
A
897 928Right-handed alpha
Helix 42
AE6
A
933 938Right-handed alpha
Helix 43
AE7
A
941 961Right-handed alpha
Helix 44
AE8
A
963 969Right-handed alpha
Helix 45
AE9
A
974 979Right-handed alpha
Helix 46
AF1
A
981 1002Right-handed alpha
Helix 47
AF2
A
1005 1010Right-handed alpha
Helix 48
AF3
B
30 59Right-handed alpha
Helix 49
AF4
B
69 73Right-handed 310
Helix 50
AF5
B
94 110Right-handed alpha
Helix 51
AF6
B
111 118Right-handed 310
Helix 52
AF7
B
152 157Right-handed 310
Helix 53
AF8
B
246 251Right-handed alpha
Helix 54
AF9
C
32 56Right-handed alpha
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There are 11 sheets in PDB entry 9ROE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 171first strand
Strand 2
A
158 163anti-parallel
Strand 3
A
180 184anti-parallel
Strand 4
A
239 250anti-parallel
Strand 5
A
192 203anti-parallel
Strand 6
A
215 216anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 171first strand
Strand 2
A
158 163anti-parallel
Strand 3
A
180 184anti-parallel
Strand 4
A
239 250anti-parallel
Strand 5
A
192 203anti-parallel
Strand 6
A
232 233anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 348first strand
Strand 2
A
738 740anti-parallel
Strand 3
A
720 724parallel
Strand 4
A
702 706parallel
Strand 5
A
362 365parallel
Strand 6
A
602 605parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 389first strand
Strand 2
A
377 382anti-parallel
Strand 3
A
573 582anti-parallel
Strand 4
A
541 549anti-parallel
Strand 5
A
493 499anti-parallel
Strand 6
A
478 484anti-parallel
Strand 7
A
466 470anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 389first strand
Strand 2
A
377 382anti-parallel
Strand 3
A
573 582anti-parallel
Strand 4
A
508 513parallel
Strand 5
A
516 519anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 423first strand
Strand 2
A
437 438anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
652 656first strand
Strand 2
A
677 681parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
888 889first strand
Strand 2
A
895 896anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 79first strand
Strand 2
B
175 180anti-parallel
Strand 3
B
258 265anti-parallel
Strand 4
B
226 230anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 88first strand
Strand 2
B
294 299parallel
Strand 3
B
272 278anti-parallel
Strand 4
B
208 214anti-parallel
Strand 5
B
237 239anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 124first strand
Strand 2
B
148 149parallel
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