Analysis of interatomic Contacts of Structural Units in PDB entry:
9ROF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9ROF entry

There are 3 chains in PDB entry 9ROF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 30TYR 1013
B
 LEU 25SER 303
C
 GLU 25ARG 58
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 9ROF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 45Right-handed alpha
Helix 2
AA2
A
54 66Right-handed alpha
Helix 3
AA3
A
78 88Right-handed alpha
Helix 4
AA4
A
91 108Right-handed alpha
Helix 5
AA5
A
116 154Right-handed alpha
Helix 6
AA6
A
205 210Right-handed alpha
Helix 7
AA7
A
251 255Right-handed 310
Helix 8
AA8
A
272 303Right-handed alpha
Helix 9
AA9
A
306 321Right-handed alpha
Helix 10
AB1
A
324 344Right-handed alpha
Helix 11
AB2
A
352 359Right-handed alpha
Helix 12
AB3
A
405 419Right-handed alpha
Helix 13
AB4
A
431 435Right-handed 310
Helix 14
AB5
A
440 453Right-handed alpha
Helix 15
AB6
A
457 462Right-handed alpha
Helix 16
AB7
A
500 505Right-handed alpha
Helix 17
AB8
A
506 508Right-handed 310
Helix 18
AB9
A
521 538Right-handed alpha
Helix 19
AC1
A
588 599Right-handed alpha
Helix 20
AC2
A
610 622Right-handed alpha
Helix 21
AC3
A
630 639Right-handed alpha
Helix 22
AC4
A
641 645Right-handed 310
Helix 23
AC5
A
646 650Right-handed 310
Helix 24
AC6
A
657 663Right-handed alpha
Helix 25
AC7
A
664 675Right-handed alpha
Helix 26
AC8
A
684 698Right-handed alpha
Helix 27
AC9
A
711 718Right-handed alpha
Helix 28
AD1
A
729 736Right-handed alpha
Helix 29
AD2
A
744 772Right-handed alpha
Helix 30
AD3
A
777 786Right-handed alpha
Helix 31
AD4
A
793 806Right-handed alpha
Helix 32
AD5
A
806 812Right-handed alpha
Helix 33
AD6
A
813 815Right-handed 310
Helix 34
AD7
A
820 824Right-handed 310
Helix 35
AD8
A
836 846Right-handed alpha
Helix 36
AD9
A
846 866Right-handed alpha
Helix 37
AE1
A
869 873Right-handed 310
Helix 38
AE2
A
876 882Right-handed alpha
Helix 39
AE3
A
897 927Right-handed alpha
Helix 40
AE4
A
933 938Right-handed alpha
Helix 41
AE5
A
941 961Right-handed alpha
Helix 42
AE6
A
963 968Right-handed alpha
Helix 43
AE7
A
974 980Right-handed 310
Helix 44
AE8
A
981 1002Right-handed alpha
Helix 45
AE9
A
1005 1012Right-handed alpha
Helix 46
AF1
B
28 59Right-handed alpha
Helix 47
AF2
B
69 73Right-handed 310
Helix 48
AF3
B
94 97Right-handed 310
Helix 49
AF4
B
98 110Right-handed alpha
Helix 50
AF5
B
111 118Right-handed 310
Helix 51
AF6
B
152 157Right-handed 310
Helix 52
AF7
B
217 224Right-handed alpha
Helix 53
AF8
B
231 235Right-handed 310
Helix 54
AF9
C
32 56Right-handed alpha
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There are 9 sheets in PDB entry 9ROF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 171first strand
Strand 2
A
158 163anti-parallel
Strand 3
A
180 183anti-parallel
Strand 4
A
243 248anti-parallel
Strand 5
A
193 199anti-parallel
Strand 6
A
232 233anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 188first strand
Strand 2
A
238 239anti-parallel
Strand 3
A
202 204anti-parallel
Strand 4
A
214 216anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 348first strand
Strand 2
A
738 740anti-parallel
Strand 3
A
720 724parallel
Strand 4
A
702 706parallel
Strand 5
A
362 365parallel
Strand 6
A
602 605parallel
Strand 7
A
677 681parallel
Strand 8
A
652 656parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 389first strand
Strand 2
A
377 383anti-parallel
Strand 3
A
574 582anti-parallel
Strand 4
A
540 549anti-parallel
Strand 5
A
494 499anti-parallel
Strand 6
A
481 483anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 389first strand
Strand 2
A
377 383anti-parallel
Strand 3
A
574 582anti-parallel
Strand 4
A
510 513parallel
Strand 5
A
516 519anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 423first strand
Strand 2
A
437 438anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
888 889first strand
Strand 2
A
895 896anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 79first strand
Strand 2
B
175 180anti-parallel
Strand 3
B
258 263anti-parallel
Strand 4
B
227 230anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 89first strand
Strand 2
B
294 300parallel
Strand 3
B
271 278anti-parallel
Strand 4
B
208 215anti-parallel
Strand 5
B
237 239anti-parallel
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