Analysis of interatomic Contacts of Structural Units in PDB entry:
9ROJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9ROJ entry

There are 3 chains in PDB entry 9ROJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 30	TYR 1013
B	LEU 25	SER 303
C	GLU 25	ARG 58

There are 51 helices in PDB entry 9ROJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	37	45	Right-handed alpha
Helix 2	AA2	A	54	66	Right-handed alpha
Helix 3	AA3	A	78	88	Right-handed alpha
Helix 4	AA4	A	91	105	Right-handed alpha
Helix 5	AA5	A	117	152	Right-handed alpha
Helix 6	AA6	A	173	175	Right-handed 310
Helix 7	AA7	A	272	303	Right-handed alpha
Helix 8	AA8	A	306	322	Right-handed alpha
Helix 9	AA9	A	325	344	Right-handed alpha
Helix 10	AB1	A	350	358	Right-handed alpha
Helix 11	AB2	A	405	419	Right-handed alpha
Helix 12	AB3	A	440	454	Right-handed alpha
Helix 13	AB4	A	456	464	Right-handed alpha
Helix 14	AB5	A	500	506	Right-handed alpha
Helix 15	AB6	A	521	538	Right-handed alpha
Helix 16	AB7	A	588	599	Right-handed alpha
Helix 17	AB8	A	610	622	Right-handed alpha
Helix 18	AB9	A	630	639	Right-handed alpha
Helix 19	AC1	A	641	645	Right-handed 310
Helix 20	AC2	A	646	650	Right-handed 310
Helix 21	AC3	A	657	663	Right-handed alpha
Helix 22	AC4	A	664	675	Right-handed alpha
Helix 23	AC5	A	684	698	Right-handed alpha
Helix 24	AC6	A	711	718	Right-handed alpha
Helix 25	AC7	A	729	736	Right-handed alpha
Helix 26	AC8	A	744	769	Right-handed alpha
Helix 27	AC9	A	770	774	Right-handed 310
Helix 28	AD1	A	777	786	Right-handed alpha
Helix 29	AD2	A	793	805	Right-handed alpha
Helix 30	AD3	A	806	812	Right-handed alpha
Helix 31	AD4	A	813	815	Right-handed 310
Helix 32	AD5	A	836	846	Right-handed alpha
Helix 33	AD6	A	847	867	Right-handed alpha
Helix 34	AD7	A	869	874	Right-handed alpha
Helix 35	AD8	A	876	882	Right-handed alpha
Helix 36	AD9	A	897	927	Right-handed alpha
Helix 37	AE1	A	933	938	Right-handed alpha
Helix 38	AE2	A	941	961	Right-handed alpha
Helix 39	AE3	A	963	968	Right-handed alpha
Helix 40	AE4	A	974	979	Right-handed alpha
Helix 41	AE5	A	981	1002	Right-handed alpha
Helix 42	AE6	A	1005	1012	Right-handed alpha
Helix 43	AE7	B	28	61	Right-handed alpha
Helix 44	AE8	B	98	109	Right-handed alpha
Helix 45	AE9	B	115	119	Right-handed 310
Helix 46	AF1	B	152	156	Right-handed 310
Helix 47	AF2	B	204	206	Right-handed 310
Helix 48	AF3	B	217	225	Right-handed alpha
Helix 49	AF4	B	231	235	Right-handed 310
Helix 50	AF5	B	246	251	Right-handed alpha
Helix 51	AF6	C	33	57	Right-handed alpha

There are 11 sheets in PDB entry 9ROJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	171	first strand
Strand 2	A	158	163	anti-parallel
Strand 3	A	180	184	anti-parallel
Strand 4	A	237	250	anti-parallel
Strand 5	A	192	205	anti-parallel
Strand 6	A	213	216	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	189	first strand
Strand 2	A	237	250	anti-parallel
Strand 3	A	192	205	anti-parallel
Strand 4	A	232	233	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	347	first strand
Strand 2	A	738	740	anti-parallel
Strand 3	A	720	724	parallel
Strand 4	A	702	704	parallel
Strand 5	A	362	365	parallel
Strand 6	A	602	605	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	386	389	first strand
Strand 2	A	377	383	anti-parallel
Strand 3	A	573	582	anti-parallel
Strand 4	A	541	548	anti-parallel
Strand 5	A	494	499	anti-parallel
Strand 6	A	479	483	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	386	389	first strand
Strand 2	A	377	383	anti-parallel
Strand 3	A	573	582	anti-parallel
Strand 4	A	508	513	parallel
Strand 5	A	516	519	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	652	656	first strand
Strand 2	A	677	681	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	888	889	first strand
Strand 2	A	895	896	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	79	first strand
Strand 2	B	175	180	anti-parallel
Strand 3	B	258	263	anti-parallel
Strand 4	B	227	230	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	89	first strand
Strand 2	B	294	300	parallel
Strand 3	B	271	277	anti-parallel
Strand 4	B	212	215	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	124	first strand
Strand 2	B	148	149	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	210	first strand
Strand 2	B	237	239	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9ROJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9ROJ