Analysis of interatomic Contacts of Structural Units in PDB entry:
9ROM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9ROM entry

There are 4 chains in PDB entry 9ROM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 19SER 365
A
 LYS 367TYR 1013
B
 SER 19SER 303
C
 ASP 27ARG 58
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 9ROM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 26Right-handed alpha
Helix 2
AA2
A
37 45Right-handed alpha
Helix 3
AA3
A
54 65Right-handed alpha
Helix 4
AA4
A
79 87Right-handed alpha
Helix 5
AA5
A
89 111Right-handed alpha
Helix 6
AA6
A
113 117Right-handed 310
Helix 7
AA7
A
118 151Right-handed alpha
Helix 8
AA8
A
173 175Right-handed 310
Helix 9
AA9
A
251 254Right-handed 310
Helix 10
AB1
A
255 266Right-handed alpha
Helix 11
AB2
A
272 303Right-handed alpha
Helix 12
AB3
A
306 322Right-handed alpha
Helix 13
AB4
A
325 344Right-handed alpha
Helix 14
AB5
A
350 354Right-handed 310
Helix 15
AB6
A
355 360Right-handed 310
Helix 16
AB7
A
405 418Right-handed alpha
Helix 17
AB8
A
440 454Right-handed alpha
Helix 18
AB9
A
457 464Right-handed alpha
Helix 19
AC1
A
500 507Right-handed alpha
Helix 20
AC2
A
521 537Right-handed alpha
Helix 21
AC3
A
588 599Right-handed alpha
Helix 22
AC4
A
610 622Right-handed alpha
Helix 23
AC5
A
630 639Right-handed alpha
Helix 24
AC6
A
641 645Right-handed 310
Helix 25
AC7
A
657 662Right-handed alpha
Helix 26
AC8
A
664 675Right-handed alpha
Helix 27
AC9
A
684 698Right-handed alpha
Helix 28
AD1
A
708 710Right-handed 310
Helix 29
AD2
A
711 718Right-handed alpha
Helix 30
AD3
A
729 736Right-handed alpha
Helix 31
AD4
A
746 772Right-handed alpha
Helix 32
AD5
A
772 786Right-handed alpha
Helix 33
AD6
A
793 803Right-handed alpha
Helix 34
AD7
A
806 812Right-handed alpha
Helix 35
AD8
A
813 815Right-handed 310
Helix 36
AD9
A
836 846Right-handed alpha
Helix 37
AE1
A
847 867Right-handed alpha
Helix 38
AE2
A
869 873Right-handed 310
Helix 39
AE3
A
876 881Right-handed alpha
Helix 40
AE4
A
897 928Right-handed alpha
Helix 41
AE5
A
933 938Right-handed alpha
Helix 42
AE6
A
941 961Right-handed alpha
Helix 43
AE7
A
962 966Right-handed 310
Helix 44
AE8
A
974 979Right-handed alpha
Helix 45
AE9
A
981 1002Right-handed alpha
Helix 46
AF1
A
1005 1012Right-handed alpha
Helix 47
AF2
B
28 59Right-handed alpha
Helix 48
AF3
B
94 97Right-handed 310
Helix 49
AF4
B
98 110Right-handed alpha
Helix 50
AF5
B
111 113Right-handed 310
Helix 51
AF6
B
114 118Right-handed 310
Helix 52
AF7
C
32 56Right-handed alpha
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There are 10 sheets in PDB entry 9ROM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 171first strand
Strand 2
A
158 163anti-parallel
Strand 3
A
180 184anti-parallel
Strand 4
A
238 250anti-parallel
Strand 5
A
192 204anti-parallel
Strand 6
A
215 216anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 188first strand
Strand 2
A
238 250anti-parallel
Strand 3
A
192 204anti-parallel
Strand 4
A
232 233anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 348first strand
Strand 2
A
738 740anti-parallel
Strand 3
A
721 724parallel
Strand 4
A
702 706parallel
Strand 5
A
362 365parallel
Strand 6
A
602 603parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 389first strand
Strand 2
A
377 383anti-parallel
Strand 3
A
573 582anti-parallel
Strand 4
A
543 550anti-parallel
Strand 5
A
493 499anti-parallel
Strand 6
A
479 484anti-parallel
Strand 7
A
466 470anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 389first strand
Strand 2
A
377 383anti-parallel
Strand 3
A
573 582anti-parallel
Strand 4
A
508 513parallel
Strand 5
A
516 519anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
605 606first strand
Strand 2
A
678 681parallel
Strand 3
A
653 656parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
888 889first strand
Strand 2
A
895 896anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 79first strand
Strand 2
B
175 180anti-parallel
Strand 3
B
259 263anti-parallel
Strand 4
B
227 228anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 124first strand
Strand 2
B
148 149parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
237 239first strand
Strand 2
B
208 215anti-parallel
Strand 3
B
272 278anti-parallel
Strand 4
B
294 299anti-parallel
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