Analysis of interatomic Contacts of Structural Units in PDB entry:
9ROO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9ROO entry

There are 3 chains in PDB entry 9ROO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 42TYR 1023
B
 PHE 24SER 303
C
 GLU 25ARG 58
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 9ROO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 54Right-handed alpha
Helix 2
AA2
A
66 76Right-handed alpha
Helix 3
AA3
A
87 97Right-handed alpha
Helix 4
AA4
A
100 122Right-handed alpha
Helix 5
AA5
A
127 161Right-handed alpha
Helix 6
AA6
A
183 185Right-handed 310
Helix 7
AA7
A
215 220Right-handed alpha
Helix 8
AA8
A
261 265Right-handed 310
Helix 9
AA9
A
282 313Right-handed alpha
Helix 10
AB1
A
316 332Right-handed alpha
Helix 11
AB2
A
334 354Right-handed alpha
Helix 12
AB3
A
360 362Right-handed 310
Helix 13
AB4
A
363 369Right-handed alpha
Helix 14
AB5
A
415 429Right-handed alpha
Helix 15
AB6
A
441 445Right-handed 310
Helix 16
AB7
A
450 464Right-handed alpha
Helix 17
AB8
A
466 474Right-handed alpha
Helix 18
AB9
A
510 517Right-handed alpha
Helix 19
AC1
A
531 547Right-handed alpha
Helix 20
AC2
A
598 609Right-handed alpha
Helix 21
AC3
A
620 632Right-handed alpha
Helix 22
AC4
A
640 649Right-handed alpha
Helix 23
AC5
A
651 655Right-handed 310
Helix 24
AC6
A
667 672Right-handed alpha
Helix 25
AC7
A
674 685Right-handed alpha
Helix 26
AC8
A
694 708Right-handed alpha
Helix 27
AC9
A
721 728Right-handed alpha
Helix 28
AD1
A
739 746Right-handed alpha
Helix 29
AD2
A
756 780Right-handed alpha
Helix 30
AD3
A
781 784Right-handed 310
Helix 31
AD4
A
787 796Right-handed alpha
Helix 32
AD5
A
803 814Right-handed alpha
Helix 33
AD6
A
816 822Right-handed alpha
Helix 34
AD7
A
823 825Right-handed 310
Helix 35
AD8
A
830 834Right-handed 310
Helix 36
AD9
A
846 856Right-handed alpha
Helix 37
AE1
A
856 876Right-handed alpha
Helix 38
AE2
A
879 884Right-handed alpha
Helix 39
AE3
A
886 891Right-handed alpha
Helix 40
AE4
A
907 938Right-handed alpha
Helix 41
AE5
A
943 948Right-handed alpha
Helix 42
AE6
A
951 971Right-handed alpha
Helix 43
AE7
A
973 978Right-handed alpha
Helix 44
AE8
A
984 990Right-handed alpha
Helix 45
AE9
A
991 1012Right-handed alpha
Helix 46
AF1
A
1015 1022Right-handed alpha
Helix 47
AF2
B
28 60Right-handed alpha
Helix 48
AF3
B
83 85Right-handed 310
Helix 49
AF4
B
98 110Right-handed alpha
Helix 50
AF5
B
111 118Right-handed 310
Helix 51
AF6
B
152 156Right-handed 310
Helix 52
AF7
B
204 206Right-handed 310
Helix 53
AF8
B
231 235Right-handed 310
Helix 54
AF9
B
246 251Right-handed alpha
Helix 55
AG1
C
32 56Right-handed alpha
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There are 10 sheets in PDB entry 9ROO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 181first strand
Strand 2
A
168 172anti-parallel
Strand 3
A
190 193anti-parallel
Strand 4
A
248 258anti-parallel
Strand 5
A
203 214anti-parallel
Strand 6
A
225 226anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 198first strand
Strand 2
A
248 258anti-parallel
Strand 3
A
203 214anti-parallel
Strand 4
A
242 243anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 358first strand
Strand 2
A
748 749anti-parallel
Strand 3
A
730 733parallel
Strand 4
A
712 716parallel
Strand 5
A
372 375parallel
Strand 6
A
612 616parallel
Strand 7
A
689 691parallel
Strand 8
A
664 666parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 399first strand
Strand 2
A
387 393anti-parallel
Strand 3
A
583 592anti-parallel
Strand 4
A
550 558anti-parallel
Strand 5
A
504 509anti-parallel
Strand 6
A
488 494anti-parallel
Strand 7
A
475 480anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 399first strand
Strand 2
A
387 393anti-parallel
Strand 3
A
583 592anti-parallel
Strand 4
A
518 523parallel
Strand 5
A
526 529anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
432 433first strand
Strand 2
A
447 448anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
898 899first strand
Strand 2
A
905 906anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 79first strand
Strand 2
B
175 180anti-parallel
Strand 3
B
258 265anti-parallel
Strand 4
B
226 230anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 90first strand
Strand 2
B
294 301parallel
Strand 3
B
272 278anti-parallel
Strand 4
B
208 215anti-parallel
Strand 5
B
237 239anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 124first strand
Strand 2
B
148 149parallel
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