Analysis of interatomic Contacts of Structural Units in PDB entry:
9ROP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9ROP entry

There are 3 chains in PDB entry 9ROP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 30TYR 1023
B
 GLU 23SER 303
C
 GLU 25ARG 58
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 52 helices in PDB entry 9ROP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 38Right-handed alpha
Helix 2
AA2
A
47 55Right-handed alpha
Helix 3
AA3
A
64 76Right-handed alpha
Helix 4
AA4
A
90 97Right-handed alpha
Helix 5
AA5
A
99 122Right-handed alpha
Helix 6
AA6
A
126 159Right-handed alpha
Helix 7
AA7
A
265 275Right-handed alpha
Helix 8
AA8
A
282 313Right-handed alpha
Helix 9
AA9
A
316 331Right-handed alpha
Helix 10
AB1
A
335 354Right-handed alpha
Helix 11
AB2
A
361 369Right-handed alpha
Helix 12
AB3
A
415 429Right-handed alpha
Helix 13
AB4
A
441 445Right-handed 310
Helix 14
AB5
A
450 464Right-handed alpha
Helix 15
AB6
A
466 473Right-handed alpha
Helix 16
AB7
A
510 517Right-handed alpha
Helix 17
AB8
A
531 547Right-handed alpha
Helix 18
AB9
A
597 609Right-handed alpha
Helix 19
AC1
A
620 631Right-handed alpha
Helix 20
AC2
A
640 649Right-handed alpha
Helix 21
AC3
A
651 655Right-handed 310
Helix 22
AC4
A
656 660Right-handed 310
Helix 23
AC5
A
674 685Right-handed alpha
Helix 24
AC6
A
694 708Right-handed alpha
Helix 25
AC7
A
718 720Right-handed 310
Helix 26
AC8
A
721 728Right-handed alpha
Helix 27
AC9
A
739 746Right-handed alpha
Helix 28
AD1
A
755 782Right-handed alpha
Helix 29
AD2
A
782 796Right-handed alpha
Helix 30
AD3
A
803 814Right-handed alpha
Helix 31
AD4
A
816 824Right-handed alpha
Helix 32
AD5
A
830 834Right-handed 310
Helix 33
AD6
A
846 855Right-handed alpha
Helix 34
AD7
A
857 876Right-handed alpha
Helix 35
AD8
A
879 884Right-handed 310
Helix 36
AD9
A
886 891Right-handed alpha
Helix 37
AE1
A
907 938Right-handed alpha
Helix 38
AE2
A
943 948Right-handed alpha
Helix 39
AE3
A
951 971Right-handed alpha
Helix 40
AE4
A
973 979Right-handed alpha
Helix 41
AE5
A
987 990Right-handed 310
Helix 42
AE6
A
991 1012Right-handed alpha
Helix 43
AE7
A
1015 1022Right-handed alpha
Helix 44
AE8
B
28 61Right-handed alpha
Helix 45
AE9
B
69 73Right-handed 310
Helix 46
AF1
B
94 110Right-handed alpha
Helix 47
AF2
B
111 113Right-handed 310
Helix 48
AF3
B
114 118Right-handed 310
Helix 49
AF4
B
152 157Right-handed 310
Helix 50
AF5
B
204 206Right-handed 310
Helix 51
AF6
B
241 243Right-handed 310
Helix 52
AF7
C
33 56Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 9ROP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 173first strand
Strand 2
A
176 181anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 193first strand
Strand 2
A
253 260anti-parallel
Strand 3
A
202 209anti-parallel
Strand 4
A
242 243anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 199first strand
Strand 2
A
247 249anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 213first strand
Strand 2
A
225 226anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
663 666first strand
Strand 2
A
688 691parallel
Strand 3
A
612 616parallel
Strand 4
A
372 375parallel
Strand 5
A
712 714parallel
Strand 6
A
730 734parallel
Strand 7
A
748 750parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 399first strand
Strand 2
A
387 393anti-parallel
Strand 3
A
583 592anti-parallel
Strand 4
A
551 560anti-parallel
Strand 5
A
502 509anti-parallel
Strand 6
A
489 495anti-parallel
Strand 7
A
475 480anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 399first strand
Strand 2
A
387 393anti-parallel
Strand 3
A
583 592anti-parallel
Strand 4
A
518 523parallel
Strand 5
A
526 529anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
898 899first strand
Strand 2
A
905 906anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 79first strand
Strand 2
B
175 179anti-parallel
Strand 3
B
258 263anti-parallel
Strand 4
B
227 230anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 88first strand
Strand 2
B
294 299parallel
Strand 3
B
272 277anti-parallel
Strand 4
B
212 216anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 124first strand
Strand 2
B
148 149parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 210first strand
Strand 2
B
237 239anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il