Analysis of interatomic Contacts of Structural Units in PDB entry:
9ROQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9ROQ entry

There are 3 chains in PDB entry 9ROQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 30TYR 1023
B
 TRP 17SER 303
C
 ASP 27ARG 58
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 9ROQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 38Right-handed alpha
Helix 2
AA2
A
47 55Right-handed alpha
Helix 3
AA3
A
64 76Right-handed alpha
Helix 4
AA4
A
88 92Right-handed 310
Helix 5
AA5
A
93 98Right-handed alpha
Helix 6
AA6
A
99 120Right-handed alpha
Helix 7
AA7
A
128 160Right-handed alpha
Helix 8
AA8
A
183 185Right-handed 310
Helix 9
AA9
A
235 239Right-handed 310
Helix 10
AB1
A
261 264Right-handed 310
Helix 11
AB2
A
265 276Right-handed alpha
Helix 12
AB3
A
282 315Right-handed alpha
Helix 13
AB4
A
316 332Right-handed alpha
Helix 14
AB5
A
335 354Right-handed alpha
Helix 15
AB6
A
415 429Right-handed alpha
Helix 16
AB7
A
441 445Right-handed 310
Helix 17
AB8
A
450 465Right-handed alpha
Helix 18
AB9
A
467 473Right-handed alpha
Helix 19
AC1
A
510 517Right-handed alpha
Helix 20
AC2
A
531 548Right-handed alpha
Helix 21
AC3
A
598 609Right-handed alpha
Helix 22
AC4
A
620 632Right-handed alpha
Helix 23
AC5
A
640 649Right-handed alpha
Helix 24
AC6
A
651 655Right-handed 310
Helix 25
AC7
A
656 660Right-handed 310
Helix 26
AC8
A
667 673Right-handed alpha
Helix 27
AC9
A
674 684Right-handed alpha
Helix 28
AD1
A
694 708Right-handed alpha
Helix 29
AD2
A
718 720Right-handed 310
Helix 30
AD3
A
721 728Right-handed alpha
Helix 31
AD4
A
739 746Right-handed alpha
Helix 32
AD5
A
756 796Right-handed alpha
Helix 33
AD6
A
803 814Right-handed alpha
Helix 34
AD7
A
815 822Right-handed alpha
Helix 35
AD8
A
830 834Right-handed 310
Helix 36
AD9
A
846 854Right-handed alpha
Helix 37
AE1
A
856 876Right-handed alpha
Helix 38
AE2
A
879 883Right-handed 310
Helix 39
AE3
A
886 891Right-handed alpha
Helix 40
AE4
A
907 938Right-handed alpha
Helix 41
AE5
A
943 948Right-handed alpha
Helix 42
AE6
A
951 971Right-handed alpha
Helix 43
AE7
A
973 978Right-handed alpha
Helix 44
AE8
A
984 989Right-handed alpha
Helix 45
AE9
A
991 1012Right-handed alpha
Helix 46
AF1
A
1015 1022Right-handed alpha
Helix 47
AF2
B
31 58Right-handed alpha
Helix 48
AF3
B
69 73Right-handed 310
Helix 49
AF4
B
94 111Right-handed alpha
Helix 50
AF5
B
112 117Right-handed 310
Helix 51
AF6
B
152 157Right-handed 310
Helix 52
AF7
C
32 56Right-handed alpha
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There are 10 sheets in PDB entry 9ROQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 172first strand
Strand 2
A
177 181anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 194first strand
Strand 2
A
248 260anti-parallel
Strand 3
A
202 214anti-parallel
Strand 4
A
225 226anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 194first strand
Strand 2
A
248 260anti-parallel
Strand 3
A
202 214anti-parallel
Strand 4
A
242 243anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 358first strand
Strand 2
A
748 750anti-parallel
Strand 3
A
732 734parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
662 666first strand
Strand 2
A
687 691parallel
Strand 3
A
612 616parallel
Strand 4
A
372 375parallel
Strand 5
A
712 715parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 399first strand
Strand 2
A
388 393anti-parallel
Strand 3
A
583 591anti-parallel
Strand 4
A
551 560anti-parallel
Strand 5
A
503 509anti-parallel
Strand 6
A
488 493anti-parallel
Strand 7
A
478 480anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 399first strand
Strand 2
A
388 393anti-parallel
Strand 3
A
583 591anti-parallel
Strand 4
A
518 523parallel
Strand 5
A
526 529anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 79first strand
Strand 2
B
175 179anti-parallel
Strand 3
B
259 263anti-parallel
Strand 4
B
227 230anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 89first strand
Strand 2
B
294 300parallel
Strand 3
B
272 278anti-parallel
Strand 4
B
208 214anti-parallel
Strand 5
B
237 239anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 124first strand
Strand 2
B
148 149parallel
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