Analysis of interatomic Contacts of Structural Units in PDB entry:
9RP3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9RP3 entry

There are 2 chains in PDB entry 9RP3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 314LYS 721
B
 LEU 311LYS 721
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 9RP3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
355 357Right-handed 310
Helix 2
AA2
A
402 404Right-handed 310
Helix 3
AA3
A
407 417Right-handed alpha
Helix 4
AA4
A
418 423Right-handed 310
Helix 5
AA5
A
446 453Right-handed alpha
Helix 6
AA6
A
479 495Right-handed alpha
Helix 7
AA7
A
519 531Right-handed alpha
Helix 8
AA8
A
534 548Right-handed alpha
Helix 9
AA9
A
552 574Right-handed alpha
Helix 10
AB1
A
583 619Right-handed alpha
Helix 11
AB2
A
643 648Right-handed alpha
Helix 12
AB3
A
650 655Right-handed alpha
Helix 13
AB4
A
665 681Right-handed alpha
Helix 14
AB5
A
682 684Right-handed 310
Helix 15
AB6
A
685 690Right-handed alpha
Helix 16
AB7
B
316 320Right-handed 310
Helix 17
AB8
B
355 358Right-handed 310
Helix 18
AB9
B
404 406Right-handed 310
Helix 19
AC1
B
407 417Right-handed alpha
Helix 20
AC2
B
418 423Right-handed 310
Helix 21
AC3
B
446 453Right-handed alpha
Helix 22
AC4
B
479 495Right-handed alpha
Helix 23
AC5
B
519 531Right-handed alpha
Helix 24
AC6
B
534 548Right-handed alpha
Helix 25
AC7
B
552 573Right-handed alpha
Helix 26
AC8
B
583 598Right-handed alpha
Helix 27
AC9
B
599 619Right-handed alpha
Helix 28
AD1
B
643 648Right-handed alpha
Helix 29
AD2
B
650 655Right-handed alpha
Helix 30
AD3
B
665 681Right-handed alpha
Helix 31
AD4
B
682 684Right-handed 310
Helix 32
AD5
B
685 690Right-handed alpha
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There are 6 sheets in PDB entry 9RP3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 345first strand
Strand 2
A
349 353anti-parallel
Strand 3
A
382 388anti-parallel
Strand 4
A
394 400anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 375first strand
Strand 2
A
658 659parallel
Strand 3
A
714 719anti-parallel
Strand 4
A
702 708anti-parallel
Strand 5
A
691 696anti-parallel
Strand 6
A
630 639parallel
Strand 7
A
506 515anti-parallel
Strand 8
A
475 476parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 445first strand
Strand 2
A
469 470parallel
Strand 3
A
506 515parallel
Strand 4
A
630 639anti-parallel
Strand 5
A
620 622anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
343 345first strand
Strand 2
B
349 353anti-parallel
Strand 3
B
382 388anti-parallel
Strand 4
B
394 400anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
374 375first strand
Strand 2
B
658 659parallel
Strand 3
B
714 719anti-parallel
Strand 4
B
702 708anti-parallel
Strand 5
B
691 696anti-parallel
Strand 6
B
630 639parallel
Strand 7
B
506 515anti-parallel
Strand 8
B
475 476parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
444 445first strand
Strand 2
B
469 470parallel
Strand 3
B
506 515parallel
Strand 4
B
630 639anti-parallel
Strand 5
B
621 622anti-parallel
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