Analysis of interatomic Contacts of Structural Units in PDB entry:
9RP9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9RP9 entry

There are 4 chains in PDB entry 9RP9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 26PHE 42
A
 ASN 44SER 174
B
 MET 1LYS 104
C
 MET 16CYS 112
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 9RP9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
123 136Right-handed alpha
Helix 2
AA2
A
137 144Right-handed 310
Helix 3
AA3
A
147 156Right-handed alpha
Helix 4
AA4
A
159 174Right-handed alpha
Helix 5
AA5
B
23 36Right-handed alpha
Helix 6
AA6
B
38 40Right-handed 310
Helix 7
AA7
B
56 61Right-handed alpha
Helix 8
AA8
B
100 104Right-handed 310
Helix 9
AA9
C
33 37Right-handed alpha
Helix 10
AB1
C
39 47Right-handed alpha
Helix 11
AB2
C
66 84Right-handed alpha
Helix 12
AB3
C
99 111Right-handed alpha
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There are 4 sheets in PDB entry 9RP9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 78first strand
Strand 2
A
37 44anti-parallel
Strand 3
A
113 118parallel
Strand 4
A
95 96anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 63first strand
Strand 2
A
50 55anti-parallel
Strand 3
A
82 87anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 50first strand
Strand 2
B
42 46anti-parallel
Strand 3
B
73 81anti-parallel
Strand 4
B
84 85anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 50first strand
Strand 2
B
42 46anti-parallel
Strand 3
B
73 81anti-parallel
Strand 4
B
2 9parallel
Strand 5
B
12 19anti-parallel
Strand 6
C
28 32parallel
Strand 7
C
18 22anti-parallel
Strand 8
C
59 61parallel
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