Analysis of interatomic Contacts of Structural Units in PDB entry:
9RPD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9RPD entry

There are 9 chains in PDB entry 9RPD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
I	ASP 22	PHE 36
J	LYS 10	ALA 164
K	SER 63	GLU 75
B	MET 1	ASP 427
D	MET 1	ASP 427
A	MET 1	GLY 436
C	MET 1	GLY 436
G	MET 1	GLY 436
E	MET 1	GLY 436

There are132 helices in PDB entry 9RPD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	I	22	36	Right-handed alpha
Helix 2	AA2	J	11	31	Right-handed alpha
Helix 3	AA3	J	34	39	Right-handed alpha
Helix 4	AA4	J	50	66	Right-handed alpha
Helix 5	AA5	J	66	74	Right-handed alpha
Helix 6	AA6	J	80	102	Right-handed alpha
Helix 7	AA7	J	111	116	Right-handed alpha
Helix 8	AA8	J	119	145	Right-handed alpha
Helix 9	AA9	J	156	164	Right-handed alpha
Helix 10	AB1	K	64	75	Right-handed alpha
Helix 11	AB2	B	10	28	Right-handed alpha
Helix 12	AB3	B	41	46	Right-handed alpha
Helix 13	AB4	B	47	49	Right-handed 310
Helix 14	AB5	B	70	79	Right-handed alpha
Helix 15	AB6	B	86	88	Right-handed 310
Helix 16	AB7	B	100	107	Right-handed alpha
Helix 17	AB8	B	107	125	Right-handed alpha
Helix 18	AB9	B	142	159	Right-handed alpha
Helix 19	AC1	B	180	196	Right-handed alpha
Helix 20	AC2	B	204	214	Right-handed alpha
Helix 21	AC3	B	221	237	Right-handed alpha
Helix 22	AC4	B	237	242	Right-handed alpha
Helix 23	AC5	B	249	258	Right-handed alpha
Helix 24	AC6	B	285	294	Right-handed alpha
Helix 25	AC7	B	295	299	Right-handed 310
Helix 26	AC8	B	304	308	Right-handed 310
Helix 27	AC9	B	322	337	Right-handed alpha
Helix 28	AD1	B	338	341	Right-handed 310
Helix 29	AD2	B	374	390	Right-handed alpha
Helix 30	AD3	B	395	400	Right-handed alpha
Helix 31	AD4	B	404	427	Right-handed alpha
Helix 32	AD5	D	10	28	Right-handed alpha
Helix 33	AD6	D	41	46	Right-handed alpha
Helix 34	AD7	D	47	49	Right-handed 310
Helix 35	AD8	D	70	79	Right-handed alpha
Helix 36	AD9	D	86	88	Right-handed 310
Helix 37	AE1	D	100	107	Right-handed alpha
Helix 38	AE2	D	107	125	Right-handed alpha
Helix 39	AE3	D	142	159	Right-handed alpha
Helix 40	AE4	D	180	196	Right-handed alpha
Helix 41	AE5	D	204	214	Right-handed alpha
Helix 42	AE6	D	221	237	Right-handed alpha
Helix 43	AE7	D	237	242	Right-handed alpha
Helix 44	AE8	D	249	258	Right-handed alpha
Helix 45	AE9	D	285	294	Right-handed alpha
Helix 46	AF1	D	295	299	Right-handed 310
Helix 47	AF2	D	304	308	Right-handed 310
Helix 48	AF3	D	322	337	Right-handed alpha
Helix 49	AF4	D	338	341	Right-handed 310
Helix 50	AF5	D	374	390	Right-handed alpha
Helix 51	AF6	D	395	400	Right-handed alpha
Helix 52	AF7	D	404	427	Right-handed alpha
Helix 53	AF8	A	10	29	Right-handed alpha
Helix 54	AF9	A	46	51	Right-handed 310
Helix 55	AG1	A	72	81	Right-handed alpha
Helix 56	AG2	A	88	90	Right-handed 310
Helix 57	AG3	A	102	108	Right-handed alpha
Helix 58	AG4	A	109	127	Right-handed alpha
Helix 59	AG5	A	143	161	Right-handed alpha
Helix 60	AG6	A	174	178	Right-handed 310
Helix 61	AG7	A	182	195	Right-handed alpha
Helix 62	AG8	A	206	217	Right-handed alpha
Helix 63	AG9	A	223	244	Right-handed alpha
Helix 64	AH1	A	251	260	Right-handed alpha
Helix 65	AH2	A	277	281	Right-handed 310
Helix 66	AH3	A	287	295	Right-handed alpha
Helix 67	AH4	A	296	301	Right-handed 310
Helix 68	AH5	A	306	310	Right-handed 310
Helix 69	AH6	A	324	339	Right-handed alpha
Helix 70	AH7	A	384	400	Right-handed alpha
Helix 71	AH8	A	404	410	Right-handed alpha
Helix 72	AH9	A	414	436	Right-handed alpha
Helix 73	AI1	C	10	29	Right-handed alpha
Helix 74	AI2	C	46	51	Right-handed 310
Helix 75	AI3	C	72	81	Right-handed alpha
Helix 76	AI4	C	88	90	Right-handed 310
Helix 77	AI5	C	102	108	Right-handed alpha
Helix 78	AI6	C	109	127	Right-handed alpha
Helix 79	AI7	C	143	161	Right-handed alpha
Helix 80	AI8	C	174	178	Right-handed 310
Helix 81	AI9	C	182	195	Right-handed alpha
Helix 82	AJ1	C	206	217	Right-handed alpha
Helix 83	AJ2	C	223	244	Right-handed alpha
Helix 84	AJ3	C	251	260	Right-handed alpha
Helix 85	AJ4	C	277	281	Right-handed 310
Helix 86	AJ5	C	287	295	Right-handed alpha
Helix 87	AJ6	C	296	301	Right-handed 310
Helix 88	AJ7	C	306	310	Right-handed 310
Helix 89	AJ8	C	324	339	Right-handed alpha
Helix 90	AJ9	C	384	400	Right-handed alpha
Helix 91	AK1	C	404	410	Right-handed alpha
Helix 92	AK2	C	414	436	Right-handed alpha
Helix 93	AK3	G	10	29	Right-handed alpha
Helix 94	AK4	G	46	51	Right-handed 310
Helix 95	AK5	G	72	81	Right-handed alpha
Helix 96	AK6	G	88	90	Right-handed 310
Helix 97	AK7	G	102	108	Right-handed alpha
Helix 98	AK8	G	109	127	Right-handed alpha
Helix 99	AK9	G	143	161	Right-handed alpha
Helix 100	AL1	G	174	178	Right-handed 310
Helix 101	AL2	G	182	195	Right-handed alpha
Helix 102	AL3	G	206	217	Right-handed alpha
Helix 103	AL4	G	223	244	Right-handed alpha
Helix 104	AL5	G	251	260	Right-handed alpha
Helix 105	AL6	G	277	281	Right-handed 310
Helix 106	AL7	G	287	295	Right-handed alpha
Helix 107	AL8	G	296	301	Right-handed 310
Helix 108	AL9	G	306	310	Right-handed 310
Helix 109	AM1	G	324	339	Right-handed alpha
Helix 110	AM2	G	384	400	Right-handed alpha
Helix 111	AM3	G	404	410	Right-handed alpha
Helix 112	AM4	G	414	436	Right-handed alpha
Helix 113	AM5	E	10	29	Right-handed alpha
Helix 114	AM6	E	46	51	Right-handed 310
Helix 115	AM7	E	72	81	Right-handed alpha
Helix 116	AM8	E	88	90	Right-handed 310
Helix 117	AM9	E	102	108	Right-handed alpha
Helix 118	AN1	E	109	127	Right-handed alpha
Helix 119	AN2	E	143	161	Right-handed alpha
Helix 120	AN3	E	174	178	Right-handed 310
Helix 121	AN4	E	182	195	Right-handed alpha
Helix 122	AN5	E	206	217	Right-handed alpha
Helix 123	AN6	E	223	244	Right-handed alpha
Helix 124	AN7	E	251	260	Right-handed alpha
Helix 125	AN8	E	277	281	Right-handed 310
Helix 126	AN9	E	287	295	Right-handed alpha
Helix 127	AO1	E	296	301	Right-handed 310
Helix 128	AO2	E	306	310	Right-handed 310
Helix 129	AO3	E	324	339	Right-handed alpha
Helix 130	AO4	E	384	400	Right-handed alpha
Helix 131	AO5	E	404	410	Right-handed alpha
Helix 132	AO6	E	414	436	Right-handed alpha

There are 16 sheets in PDB entry 9RPD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	92	first strand
Strand 2	B	63	67	parallel
Strand 3	B	3	9	parallel
Strand 4	B	130	138	parallel
Strand 5	B	163	170	parallel
Strand 6	B	198	203	parallel
Strand 7	B	265	271	parallel
Strand 8	B	364	371	anti-parallel
Strand 9	B	310	318	anti-parallel
Strand 10	B	349	354	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	54	first strand
Strand 2	B	58	61	anti-parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	92	first strand
Strand 2	D	63	67	parallel
Strand 3	D	3	9	parallel
Strand 4	D	130	138	parallel
Strand 5	D	163	170	parallel
Strand 6	D	198	203	parallel
Strand 7	D	265	271	parallel
Strand 8	D	364	371	anti-parallel
Strand 9	D	310	318	anti-parallel
Strand 10	D	349	354	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	51	54	first strand
Strand 2	D	58	61	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	94	first strand
Strand 2	A	65	69	parallel
Strand 3	A	4	9	parallel
Strand 4	A	134	140	parallel
Strand 5	A	165	172	parallel
Strand 6	A	200	205	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	61	63	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	273	first strand
Strand 2	A	373	381	anti-parallel
Strand 3	A	312	321	anti-parallel
Strand 4	A	351	356	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	94	first strand
Strand 2	C	65	69	parallel
Strand 3	C	4	9	parallel
Strand 4	C	134	140	parallel
Strand 5	C	165	172	parallel
Strand 6	C	200	205	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	55	first strand
Strand 2	C	61	63	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	269	273	first strand
Strand 2	C	373	381	anti-parallel
Strand 3	C	312	321	anti-parallel
Strand 4	C	351	356	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	92	94	first strand
Strand 2	G	65	69	parallel
Strand 3	G	4	9	parallel
Strand 4	G	134	140	parallel
Strand 5	G	165	172	parallel
Strand 6	G	200	205	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	53	55	first strand
Strand 2	G	61	63	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	269	273	first strand
Strand 2	G	373	381	anti-parallel
Strand 3	G	312	321	anti-parallel
Strand 4	G	351	356	parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	92	94	first strand
Strand 2	E	65	69	parallel
Strand 3	E	4	9	parallel
Strand 4	E	134	140	parallel
Strand 5	E	165	172	parallel
Strand 6	E	200	205	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	55	first strand
Strand 2	E	61	63	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	269	273	first strand
Strand 2	E	373	381	anti-parallel
Strand 3	E	312	321	anti-parallel
Strand 4	E	351	356	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9RPD

Analysis of interatomic Contacts of Structural Units in PDB entry:
9RPD