Analysis of interatomic Contacts of Structural Units in PDB entry:
9RPR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9RPR entry

There are 3 chains in PDB entry 9RPR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 CYS 19SER 169
A
 ALA 25LEU 784
C
 CYS 20TYR 67
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 9RPR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
31 33Right-handed 310
Helix 2
AA2
B
45 58Right-handed alpha
Helix 3
AA3
B
129 131Right-handed 310
Helix 4
AA4
B
132 157Right-handed alpha
Helix 5
AA5
B
158 169Right-handed alpha
Helix 6
AA6
A
26 31Right-handed alpha
Helix 7
AA7
A
295 302Right-handed alpha
Helix 8
AA8
A
338 343Right-handed alpha
Helix 9
AA9
A
463 469Right-handed alpha
Helix 10
AB1
A
537 542Right-handed 310
Helix 11
AB2
A
660 668Right-handed alpha
Helix 12
AB3
A
768 774Right-handed alpha
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There are 7 sheets in PDB entry 9RPR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 17 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 23first strand
Strand 2
A
493 496anti-parallel
Strand 3
A
505 517anti-parallel
Strand 4
A
477 491anti-parallel
Strand 5
A
445 461anti-parallel
Strand 6
A
426 441anti-parallel
Strand 7
A
406 419anti-parallel
Strand 8
A
388 403anti-parallel
Strand 9
A
368 379anti-parallel
Strand 10
A
354 365anti-parallel
Strand 11
A
325 334anti-parallel
Strand 12
A
310 321anti-parallel
Strand 13
A
284 292anti-parallel
Strand 14
A
269 279anti-parallel
Strand 15
A
255 264anti-parallel
Strand 16
A
247 252anti-parallel
Strand 17
A
227 228anti-parallel
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There are 19 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 23first strand
Strand 2
A
493 496anti-parallel
Strand 3
A
505 517anti-parallel
Strand 4
A
555 567anti-parallel
Strand 5
A
573 584anti-parallel
Strand 6
A
604 614anti-parallel
Strand 7
A
620 629anti-parallel
Strand 8
A
634 647anti-parallel
Strand 9
A
650 659anti-parallel
Strand 10
A
682 693anti-parallel
Strand 11
A
697 706anti-parallel
Strand 12
A
711 722anti-parallel
Strand 13
A
726 740anti-parallel
Strand 14
A
745 758anti-parallel
Strand 15
A
232 236anti-parallel
Strand 16
A
240 244anti-parallel
Strand 17
A
255 264anti-parallel
Strand 18
A
247 252anti-parallel
Strand 19
A
227 228anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 63first strand
Strand 2
B
35 40parallel
Strand 3
B
74 89parallel
Strand 4
B
95 109anti-parallel
Strand 5
B
115 127anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 63first strand
Strand 2
B
35 40parallel
Strand 3
B
74 89parallel
Strand 4
C
52 53parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 77first strand
Strand 2
A
80 82anti-parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 90first strand
Strand 2
A
103 112anti-parallel
Strand 3
A
119 127anti-parallel
Strand 4
A
132 138anti-parallel
Strand 5
A
151 157anti-parallel
Strand 6
A
162 166anti-parallel
Strand 7
A
188 190anti-parallel
Strand 8
A
195 197anti-parallel
Strand 9
A
218 219anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 183first strand
Strand 2
A
201 205anti-parallel
Strand 3
A
208 213anti-parallel
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