Analysis of interatomic Contacts of Structural Units in PDB entry:
9RRF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9RRF entry

There are 4 chains in PDB entry 9RRF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 17	ARG 754
B	ARG 17	ARG 754
C	ARG 17	ARG 754
D	ARG 17	ARG 754

There are156 helices in PDB entry 9RRF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	43	Right-handed alpha
Helix 2	AA2	A	44	59	Right-handed alpha
Helix 3	AA3	A	72	81	Right-handed alpha
Helix 4	AA4	A	82	92	Right-handed alpha
Helix 5	AA5	A	98	107	Right-handed alpha
Helix 6	AA6	A	108	118	Right-handed alpha
Helix 7	AA7	A	144	153	Right-handed alpha
Helix 8	AA8	A	154	163	Right-handed alpha
Helix 9	AA9	A	178	188	Right-handed alpha
Helix 10	AB1	A	188	204	Right-handed alpha
Helix 11	AB2	A	205	213	Right-handed alpha
Helix 12	AB3	A	215	234	Right-handed alpha
Helix 13	AB4	A	237	258	Right-handed alpha
Helix 14	AB5	A	261	270	Right-handed alpha
Helix 15	AB6	A	287	296	Right-handed alpha
Helix 16	AB7	A	298	303	Right-handed alpha
Helix 17	AB8	A	304	316	Right-handed alpha
Helix 18	AB9	A	326	340	Right-handed alpha
Helix 19	AC1	A	340	351	Right-handed alpha
Helix 20	AC2	A	356	361	Right-handed 310
Helix 21	AC3	A	362	386	Right-handed alpha
Helix 22	AC4	A	401	423	Right-handed alpha
Helix 23	AC5	A	426	433	Right-handed alpha
Helix 24	AC6	A	433	460	Right-handed alpha
Helix 25	AC7	A	465	469	Right-handed 310
Helix 26	AC8	A	473	492	Right-handed alpha
Helix 27	AC9	A	493	500	Right-handed 310
Helix 28	AD1	A	503	513	Right-handed alpha
Helix 29	AD2	A	513	540	Right-handed alpha
Helix 30	AD3	A	541	543	Right-handed 310
Helix 31	AD4	A	545	553	Right-handed 310
Helix 32	AD5	A	567	579	Right-handed alpha
Helix 33	AD6	A	584	589	Right-handed 310
Helix 34	AD7	A	594	614	Right-handed alpha
Helix 35	AD8	A	615	634	Right-handed alpha
Helix 36	AD9	A	634	649	Right-handed alpha
Helix 37	AE1	A	658	663	Right-handed alpha
Helix 38	AE2	A	704	733	Right-handed alpha
Helix 39	AE3	A	734	754	Right-handed alpha
Helix 40	AE4	B	30	43	Right-handed alpha
Helix 41	AE5	B	44	59	Right-handed alpha
Helix 42	AE6	B	72	81	Right-handed alpha
Helix 43	AE7	B	82	92	Right-handed alpha
Helix 44	AE8	B	98	107	Right-handed alpha
Helix 45	AE9	B	108	118	Right-handed alpha
Helix 46	AF1	B	144	153	Right-handed alpha
Helix 47	AF2	B	154	163	Right-handed alpha
Helix 48	AF3	B	178	188	Right-handed alpha
Helix 49	AF4	B	188	204	Right-handed alpha
Helix 50	AF5	B	205	213	Right-handed alpha
Helix 51	AF6	B	215	234	Right-handed alpha
Helix 52	AF7	B	237	258	Right-handed alpha
Helix 53	AF8	B	261	270	Right-handed alpha
Helix 54	AF9	B	287	296	Right-handed alpha
Helix 55	AG1	B	298	303	Right-handed alpha
Helix 56	AG2	B	304	316	Right-handed alpha
Helix 57	AG3	B	326	340	Right-handed alpha
Helix 58	AG4	B	340	351	Right-handed alpha
Helix 59	AG5	B	356	361	Right-handed 310
Helix 60	AG6	B	362	386	Right-handed alpha
Helix 61	AG7	B	401	423	Right-handed alpha
Helix 62	AG8	B	426	433	Right-handed alpha
Helix 63	AG9	B	433	460	Right-handed alpha
Helix 64	AH1	B	465	469	Right-handed 310
Helix 65	AH2	B	473	492	Right-handed alpha
Helix 66	AH3	B	493	500	Right-handed 310
Helix 67	AH4	B	503	513	Right-handed alpha
Helix 68	AH5	B	513	540	Right-handed alpha
Helix 69	AH6	B	541	543	Right-handed 310
Helix 70	AH7	B	545	553	Right-handed 310
Helix 71	AH8	B	567	579	Right-handed alpha
Helix 72	AH9	B	584	589	Right-handed 310
Helix 73	AI1	B	594	614	Right-handed alpha
Helix 74	AI2	B	615	634	Right-handed alpha
Helix 75	AI3	B	634	649	Right-handed alpha
Helix 76	AI4	B	658	663	Right-handed alpha
Helix 77	AI5	B	704	733	Right-handed alpha
Helix 78	AI6	B	734	754	Right-handed alpha
Helix 79	AI7	C	30	43	Right-handed alpha
Helix 80	AI8	C	44	59	Right-handed alpha
Helix 81	AI9	C	72	81	Right-handed alpha
Helix 82	AJ1	C	82	92	Right-handed alpha
Helix 83	AJ2	C	98	107	Right-handed alpha
Helix 84	AJ3	C	108	118	Right-handed alpha
Helix 85	AJ4	C	144	153	Right-handed alpha
Helix 86	AJ5	C	154	163	Right-handed alpha
Helix 87	AJ6	C	178	188	Right-handed alpha
Helix 88	AJ7	C	188	204	Right-handed alpha
Helix 89	AJ8	C	205	213	Right-handed alpha
Helix 90	AJ9	C	215	234	Right-handed alpha
Helix 91	AK1	C	237	258	Right-handed alpha
Helix 92	AK2	C	261	270	Right-handed alpha
Helix 93	AK3	C	287	296	Right-handed alpha
Helix 94	AK4	C	298	303	Right-handed alpha
Helix 95	AK5	C	304	316	Right-handed alpha
Helix 96	AK6	C	326	340	Right-handed alpha
Helix 97	AK7	C	340	351	Right-handed alpha
Helix 98	AK8	C	356	361	Right-handed 310
Helix 99	AK9	C	362	386	Right-handed alpha
Helix 100	AL1	C	401	423	Right-handed alpha
Helix 101	AL2	C	426	433	Right-handed alpha
Helix 102	AL3	C	433	460	Right-handed alpha
Helix 103	AL4	C	465	469	Right-handed 310
Helix 104	AL5	C	473	492	Right-handed alpha
Helix 105	AL6	C	493	500	Right-handed 310
Helix 106	AL7	C	503	513	Right-handed alpha
Helix 107	AL8	C	513	540	Right-handed alpha
Helix 108	AL9	C	541	543	Right-handed 310
Helix 109	AM1	C	545	553	Right-handed 310
Helix 110	AM2	C	567	579	Right-handed alpha
Helix 111	AM3	C	584	589	Right-handed 310
Helix 112	AM4	C	594	614	Right-handed alpha
Helix 113	AM5	C	615	634	Right-handed alpha
Helix 114	AM6	C	634	649	Right-handed alpha
Helix 115	AM7	C	658	663	Right-handed alpha
Helix 116	AM8	C	704	733	Right-handed alpha
Helix 117	AM9	C	734	754	Right-handed alpha
Helix 118	AN1	D	30	43	Right-handed alpha
Helix 119	AN2	D	44	59	Right-handed alpha
Helix 120	AN3	D	72	80	Right-handed alpha
Helix 121	AN4	D	82	92	Right-handed alpha
Helix 122	AN5	D	98	107	Right-handed alpha
Helix 123	AN6	D	108	118	Right-handed alpha
Helix 124	AN7	D	144	153	Right-handed alpha
Helix 125	AN8	D	154	163	Right-handed alpha
Helix 126	AN9	D	178	188	Right-handed alpha
Helix 127	AO1	D	188	204	Right-handed alpha
Helix 128	AO2	D	205	213	Right-handed alpha
Helix 129	AO3	D	215	234	Right-handed alpha
Helix 130	AO4	D	237	258	Right-handed alpha
Helix 131	AO5	D	261	270	Right-handed alpha
Helix 132	AO6	D	287	296	Right-handed alpha
Helix 133	AO7	D	298	303	Right-handed alpha
Helix 134	AO8	D	304	316	Right-handed alpha
Helix 135	AO9	D	326	340	Right-handed alpha
Helix 136	AP1	D	340	351	Right-handed alpha
Helix 137	AP2	D	356	361	Right-handed 310
Helix 138	AP3	D	362	386	Right-handed alpha
Helix 139	AP4	D	401	423	Right-handed alpha
Helix 140	AP5	D	426	433	Right-handed alpha
Helix 141	AP6	D	433	460	Right-handed alpha
Helix 142	AP7	D	465	469	Right-handed 310
Helix 143	AP8	D	473	492	Right-handed alpha
Helix 144	AP9	D	493	500	Right-handed 310
Helix 145	AQ1	D	503	513	Right-handed alpha
Helix 146	AQ2	D	513	540	Right-handed alpha
Helix 147	AQ3	D	541	543	Right-handed 310
Helix 148	AQ4	D	545	553	Right-handed 310
Helix 149	AQ5	D	567	579	Right-handed alpha
Helix 150	AQ6	D	584	589	Right-handed 310
Helix 151	AQ7	D	594	614	Right-handed alpha
Helix 152	AQ8	D	615	634	Right-handed alpha
Helix 153	AQ9	D	634	649	Right-handed alpha
Helix 154	AR1	D	658	663	Right-handed alpha
Helix 155	AR2	D	704	733	Right-handed alpha
Helix 156	AR3	D	734	754	Right-handed alpha

There are 4 sheets in PDB entry 9RRF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	19	first strand
Strand 2	D	167	168	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	168	first strand
Strand 2	C	18	19	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	19	first strand
Strand 2	C	167	168	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	168	first strand
Strand 2	D	18	19	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9RRF

Analysis of interatomic Contacts of Structural Units in PDB entry:
9RRF