Analysis of interatomic Contacts of Structural Units in PDB entry:
9RS8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9RS8 entry

There are 2 chains in PDB entry 9RS8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 8LEU 418
B
 GLY 302VAL 925
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 9RS8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 56Right-handed alpha
Helix 2
AA2
A
91 110Right-handed alpha
Helix 3
AA3
A
122 130Right-handed alpha
Helix 4
AA4
A
131 140Right-handed alpha
Helix 5
AA5
A
145 150Right-handed alpha
Helix 6
AA6
A
160 175Right-handed alpha
Helix 7
AA7
A
191 197Right-handed alpha
Helix 8
AA8
A
198 212Right-handed alpha
Helix 9
AA9
A
262 268Right-handed alpha
Helix 10
AB1
A
271 279Right-handed alpha
Helix 11
AB2
A
280 285Right-handed alpha
Helix 12
AB3
A
322 342Right-handed alpha
Helix 13
AB4
A
402 415Right-handed alpha
Helix 14
AB5
B
322 326Right-handed alpha
Helix 15
AB6
B
334 343Right-handed alpha
Helix 16
AB7
B
343 358Right-handed alpha
Helix 17
AB8
B
396 416Right-handed alpha
Helix 18
AB9
B
417 424Right-handed alpha
Helix 19
AC1
B
427 444Right-handed alpha
Helix 20
AC2
B
458 468Right-handed alpha
Helix 21
AC3
B
479 495Right-handed alpha
Helix 22
AC4
B
531 545Right-handed alpha
Helix 23
AC5
B
624 634Right-handed alpha
Helix 24
AC6
B
637 648Right-handed alpha
Helix 25
AC7
B
816 823Right-handed alpha
Helix 26
AC8
B
827 856Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 9RS8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 24first strand
Strand 2
A
10 16anti-parallel
Strand 3
A
79 85anti-parallel
Strand 4
A
73 75anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 154first strand
Strand 2
A
308 312parallel
Strand 3
A
296 303anti-parallel
Strand 4
A
390 394anti-parallel
Strand 5
A
379 383anti-parallel
Strand 6
A
364 368anti-parallel
Strand 7
B
878 882anti-parallel
Strand 8
B
905 909anti-parallel
Strand 9
B
915 919anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 190first strand
Strand 2
A
179 183anti-parallel
Strand 3
A
244 250anti-parallel
Strand 4
A
233 241anti-parallel
Strand 5
A
217 222anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
327 330first strand
Strand 2
B
308 312anti-parallel
Strand 3
B
387 391anti-parallel
Strand 4
B
372 377anti-parallel
Strand 5
B
365 369anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
474 475first strand
Strand 2
B
811 813parallel
Strand 3
B
805 806anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
524 528first strand
Strand 2
B
513 521anti-parallel
Strand 3
B
599 606anti-parallel
Strand 4
B
589 597anti-parallel
Strand 5
B
556 565anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il