Analysis of interatomic Contacts of Structural Units in PDB entry:
9RTD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9RTD entry

There are 5 chains in PDB entry 9RTD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 3	ALA 316
B	PRO 3	ALA 316
C	LYS 4	ALA 316
D	PRO 3	ALA 316
G	G 6	C 37

There are 68 helices in PDB entry 9RTD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	27	Right-handed alpha
Helix 2	AA2	A	39	50	Right-handed alpha
Helix 3	AA3	A	50	56	Right-handed alpha
Helix 4	AA4	A	66	71	Right-handed 310
Helix 5	AA5	A	94	96	Right-handed 310
Helix 6	AA6	A	97	117	Right-handed alpha
Helix 7	AA7	A	128	141	Right-handed alpha
Helix 8	AA8	A	143	145	Right-handed 310
Helix 9	AA9	A	151	168	Right-handed alpha
Helix 10	AB1	A	170	172	Right-handed 310
Helix 11	AB2	A	190	192	Right-handed 310
Helix 12	AB3	A	200	206	Right-handed alpha
Helix 13	AB4	A	210	223	Right-handed alpha
Helix 14	AB5	A	223	231	Right-handed alpha
Helix 15	AB6	A	236	252	Right-handed alpha
Helix 16	AB7	A	267	269	Right-handed 310
Helix 17	AB8	A	295	316	Right-handed alpha
Helix 18	AB9	B	13	27	Right-handed alpha
Helix 19	AC1	B	39	50	Right-handed alpha
Helix 20	AC2	B	50	56	Right-handed alpha
Helix 21	AC3	B	66	71	Right-handed 310
Helix 22	AC4	B	94	96	Right-handed 310
Helix 23	AC5	B	97	117	Right-handed alpha
Helix 24	AC6	B	128	141	Right-handed alpha
Helix 25	AC7	B	143	145	Right-handed 310
Helix 26	AC8	B	151	168	Right-handed alpha
Helix 27	AC9	B	170	172	Right-handed 310
Helix 28	AD1	B	190	192	Right-handed 310
Helix 29	AD2	B	200	206	Right-handed alpha
Helix 30	AD3	B	210	223	Right-handed alpha
Helix 31	AD4	B	223	231	Right-handed alpha
Helix 32	AD5	B	236	252	Right-handed alpha
Helix 33	AD6	B	267	269	Right-handed 310
Helix 34	AD7	B	295	314	Right-handed alpha
Helix 35	AD8	C	13	26	Right-handed alpha
Helix 36	AD9	C	39	50	Right-handed alpha
Helix 37	AE1	C	50	56	Right-handed alpha
Helix 38	AE2	C	66	71	Right-handed 310
Helix 39	AE3	C	94	96	Right-handed 310
Helix 40	AE4	C	97	117	Right-handed alpha
Helix 41	AE5	C	128	141	Right-handed alpha
Helix 42	AE6	C	143	145	Right-handed 310
Helix 43	AE7	C	151	168	Right-handed alpha
Helix 44	AE8	C	170	172	Right-handed 310
Helix 45	AE9	C	190	192	Right-handed 310
Helix 46	AF1	C	200	206	Right-handed alpha
Helix 47	AF2	C	210	223	Right-handed alpha
Helix 48	AF3	C	223	231	Right-handed alpha
Helix 49	AF4	C	236	253	Right-handed alpha
Helix 50	AF5	C	267	269	Right-handed 310
Helix 51	AF6	C	295	314	Right-handed alpha
Helix 52	AF7	D	13	26	Right-handed alpha
Helix 53	AF8	D	39	50	Right-handed alpha
Helix 54	AF9	D	50	56	Right-handed alpha
Helix 55	AG1	D	66	71	Right-handed 310
Helix 56	AG2	D	94	96	Right-handed 310
Helix 57	AG3	D	97	117	Right-handed alpha
Helix 58	AG4	D	128	141	Right-handed alpha
Helix 59	AG5	D	143	145	Right-handed 310
Helix 60	AG6	D	151	168	Right-handed alpha
Helix 61	AG7	D	170	172	Right-handed 310
Helix 62	AG8	D	190	192	Right-handed 310
Helix 63	AG9	D	200	206	Right-handed alpha
Helix 64	AH1	D	210	223	Right-handed alpha
Helix 65	AH2	D	223	231	Right-handed alpha
Helix 66	AH3	D	236	252	Right-handed alpha
Helix 67	AH4	D	267	269	Right-handed 310
Helix 68	AH5	D	295	316	Right-handed alpha

There are 13 sheets in PDB entry 9RTD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	64	first strand
Strand 2	A	30	34	parallel
Strand 3	A	6	10	parallel
Strand 4	A	75	78	parallel
Strand 5	A	121	124	parallel
Strand 6	A	147	150	parallel
Strand 7	A	256	265	anti-parallel
Strand 8	A	271	282	anti-parallel
Strand 9	A	285	289	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	175	first strand
Strand 2	A	194	195	anti-parallel
Strand 3	A	198	199	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	179	first strand
Strand 2	A	187	188	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	64	first strand
Strand 2	B	30	34	parallel
Strand 3	B	6	10	parallel
Strand 4	B	75	78	parallel
Strand 5	B	121	124	parallel
Strand 6	B	147	149	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	175	first strand
Strand 2	B	194	195	anti-parallel
Strand 3	B	198	199	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	179	first strand
Strand 2	B	187	188	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	256	265	first strand
Strand 2	B	271	282	anti-parallel
Strand 3	B	285	289	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	64	first strand
Strand 2	C	30	34	parallel
Strand 3	C	6	10	parallel
Strand 4	C	75	78	parallel
Strand 5	C	121	124	parallel
Strand 6	C	147	150	parallel
Strand 7	C	256	265	anti-parallel
Strand 8	C	271	282	anti-parallel
Strand 9	C	285	289	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	174	175	first strand
Strand 2	C	194	195	anti-parallel
Strand 3	C	198	199	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	178	179	first strand
Strand 2	C	187	188	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	61	64	first strand
Strand 2	D	30	34	parallel
Strand 3	D	6	10	parallel
Strand 4	D	75	78	parallel
Strand 5	D	121	124	parallel
Strand 6	D	147	150	parallel
Strand 7	D	256	265	anti-parallel
Strand 8	D	271	282	anti-parallel
Strand 9	D	285	289	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	174	175	first strand
Strand 2	D	194	195	anti-parallel
Strand 3	D	198	199	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	178	179	first strand
Strand 2	D	187	188	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9RTD

Analysis of interatomic Contacts of Structural Units in PDB entry:
9RTD