Analysis of interatomic Contacts of Structural Units in PDB entry:
9RTE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9RTE entry

There are 2 chains in PDB entry 9RTE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 26	SER 512
B	THR 25	SER 511

There are 38 helices in PDB entry 9RTE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	36	48	Right-handed alpha
Helix 2	AA2	A	71	78	Right-handed alpha
Helix 3	AA3	A	78	98	Right-handed alpha
Helix 4	AA4	A	111	137	Right-handed alpha
Helix 5	AA5	A	186	191	Right-handed alpha
Helix 6	AA6	A	193	198	Right-handed alpha
Helix 7	AA7	A	213	226	Right-handed alpha
Helix 8	AA8	A	243	257	Right-handed alpha
Helix 9	AA9	A	302	305	Right-handed 310
Helix 10	AB1	A	306	311	Right-handed alpha
Helix 11	AB2	A	336	339	Right-handed 310
Helix 12	AB3	A	345	362	Right-handed alpha
Helix 13	AB4	A	389	398	Right-handed alpha
Helix 14	AB5	A	411	417	Right-handed alpha
Helix 15	AB6	A	422	426	Right-handed 310
Helix 16	AB7	A	447	449	Right-handed 310
Helix 17	AB8	A	461	475	Right-handed alpha
Helix 18	AB9	A	478	484	Right-handed alpha
Helix 19	AC1	A	492	498	Right-handed 310
Helix 20	AC2	B	36	48	Right-handed alpha
Helix 21	AC3	B	71	78	Right-handed alpha
Helix 22	AC4	B	78	98	Right-handed alpha
Helix 23	AC5	B	111	137	Right-handed alpha
Helix 24	AC6	B	186	191	Right-handed alpha
Helix 25	AC7	B	193	198	Right-handed alpha
Helix 26	AC8	B	213	226	Right-handed alpha
Helix 27	AC9	B	243	257	Right-handed alpha
Helix 28	AD1	B	302	305	Right-handed 310
Helix 29	AD2	B	306	311	Right-handed alpha
Helix 30	AD3	B	336	339	Right-handed 310
Helix 31	AD4	B	345	362	Right-handed alpha
Helix 32	AD5	B	389	398	Right-handed alpha
Helix 33	AD6	B	411	417	Right-handed alpha
Helix 34	AD7	B	422	426	Right-handed 310
Helix 35	AD8	B	447	449	Right-handed 310
Helix 36	AD9	B	461	475	Right-handed alpha
Helix 37	AE1	B	478	484	Right-handed alpha
Helix 38	AE2	B	492	498	Right-handed 310

There are 13 sheets in PDB entry 9RTE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	142	first strand
Strand 2	A	53	56	parallel
Strand 3	A	28	33	parallel
Strand 4	A	162	172	parallel
Strand 5	A	153	157	anti-parallel
Strand 6	A	146	150	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	142	first strand
Strand 2	A	53	56	parallel
Strand 3	A	28	33	parallel
Strand 4	A	162	172	parallel
Strand 5	A	332	334	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	110	first strand
Strand 2	B	104	110	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	178	first strand
Strand 2	A	298	300	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	260	263	first strand
Strand 2	A	230	234	parallel
Strand 3	A	207	210	parallel
Strand 4	A	291	294	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	273	first strand
Strand 2	A	276	281	anti-parallel
Strand 3	A	286	289	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	377	first strand
Strand 2	A	382	387	anti-parallel
Strand 3	A	451	459	anti-parallel
Strand 4	A	438	445	anti-parallel
Strand 5	A	402	409	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	142	first strand
Strand 2	B	53	56	parallel
Strand 3	B	28	33	parallel
Strand 4	B	162	172	parallel
Strand 5	B	153	157	anti-parallel
Strand 6	B	146	150	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	142	first strand
Strand 2	B	53	56	parallel
Strand 3	B	28	33	parallel
Strand 4	B	162	172	parallel
Strand 5	B	332	334	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	178	first strand
Strand 2	B	298	300	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	260	263	first strand
Strand 2	B	230	234	parallel
Strand 3	B	207	210	parallel
Strand 4	B	291	294	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	267	273	first strand
Strand 2	B	276	281	anti-parallel
Strand 3	B	286	289	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	375	377	first strand
Strand 2	B	382	387	anti-parallel
Strand 3	B	451	459	anti-parallel
Strand 4	B	438	445	anti-parallel
Strand 5	B	402	409	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9RTE

Analysis of interatomic Contacts of Structural Units in PDB entry:
9RTE