Analysis of interatomic Contacts of Structural Units in PDB entry:
9RTN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9RTN entry

There are 5 chains in PDB entry 9RTN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	GLU 14	SER 139
G	MET 1	VAL 171
O	VAL 2022	GLN 2030
Z	ARG 416	ALA 646
M	THR 283	HIS 1310

There are 69 helices in PDB entry 9RTN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	23	28	Right-handed alpha
Helix 2	AA2	D	33	49	Right-handed alpha
Helix 3	AA3	D	58	71	Right-handed alpha
Helix 4	AA4	D	76	89	Right-handed alpha
Helix 5	AA5	D	95	103	Right-handed alpha
Helix 6	AA6	D	107	115	Right-handed alpha
Helix 7	AA7	D	116	119	Right-handed 310
Helix 8	AA8	D	123	137	Right-handed alpha
Helix 9	AA9	G	14	18	Right-handed 310
Helix 10	AB1	G	21	29	Right-handed alpha
Helix 11	AB2	G	111	113	Right-handed 310
Helix 12	AB3	Z	464	466	Right-handed 310
Helix 13	AB4	Z	630	633	Right-handed 310
Helix 14	AB5	Z	641	643	Right-handed 310
Helix 15	AB6	M	284	292	Right-handed alpha
Helix 16	AB7	M	295	300	Right-handed alpha
Helix 17	AB8	M	309	325	Right-handed alpha
Helix 18	AB9	M	354	368	Right-handed alpha
Helix 19	AC1	M	372	380	Right-handed alpha
Helix 20	AC2	M	381	384	Right-handed 310
Helix 21	AC3	M	389	430	Right-handed alpha
Helix 22	AC4	M	444	453	Right-handed alpha
Helix 23	AC5	M	456	472	Right-handed alpha
Helix 24	AC6	M	474	483	Right-handed alpha
Helix 25	AC7	M	522	530	Right-handed alpha
Helix 26	AC8	M	532	537	Right-handed alpha
Helix 27	AC9	M	538	540	Right-handed 310
Helix 28	AD1	M	542	553	Right-handed alpha
Helix 29	AD2	M	565	570	Right-handed alpha
Helix 30	AD3	M	571	574	Right-handed 310
Helix 31	AD4	M	580	598	Right-handed alpha
Helix 32	AD5	M	599	614	Right-handed alpha
Helix 33	AD6	M	621	628	Right-handed alpha
Helix 34	AD7	M	632	637	Right-handed 310
Helix 35	AD8	M	646	648	Right-handed 310
Helix 36	AD9	M	651	662	Right-handed alpha
Helix 37	AE1	M	677	683	Right-handed alpha
Helix 38	AE2	M	684	690	Right-handed alpha
Helix 39	AE3	M	691	693	Right-handed 310
Helix 40	AE4	M	699	720	Right-handed alpha
Helix 41	AE5	M	720	754	Right-handed alpha
Helix 42	AE6	M	822	844	Right-handed alpha
Helix 43	AE7	M	855	874	Right-handed alpha
Helix 44	AE8	M	887	896	Right-handed alpha
Helix 45	AE9	M	896	903	Right-handed alpha
Helix 46	AF1	M	907	922	Right-handed alpha
Helix 47	AF2	M	922	930	Right-handed alpha
Helix 48	AF3	M	935	940	Right-handed 310
Helix 49	AF4	M	945	949	Right-handed 310
Helix 50	AF5	M	950	970	Right-handed alpha
Helix 51	AF6	M	973	979	Right-handed alpha
Helix 52	AF7	M	980	989	Right-handed 310
Helix 53	AF8	M	992	1008	Right-handed alpha
Helix 54	AF9	M	1014	1020	Right-handed alpha
Helix 55	AG1	M	1024	1032	Right-handed alpha
Helix 56	AG2	M	1038	1042	Right-handed 310
Helix 57	AG3	M	1043	1049	Right-handed 310
Helix 58	AG4	M	1051	1056	Right-handed 310
Helix 59	AG5	M	1059	1061	Right-handed 310
Helix 60	AG6	M	1062	1074	Right-handed alpha
Helix 61	AG7	M	1085	1095	Right-handed alpha
Helix 62	AG8	M	1096	1102	Right-handed 310
Helix 63	AG9	M	1103	1114	Right-handed alpha
Helix 64	AH1	M	1119	1132	Right-handed alpha
Helix 65	AH2	M	1145	1155	Right-handed alpha
Helix 66	AH3	M	1243	1245	Right-handed 310
Helix 67	AH4	M	1252	1256	Right-handed 310
Helix 68	AH5	M	1282	1287	Right-handed alpha
Helix 69	AH6	M	1302	1310	Right-handed alpha

There are 12 sheets in PDB entry 9RTN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	31	first strand
Strand 2	G	2	5	anti-parallel
Strand 3	G	66	77	anti-parallel
Strand 4	G	43	54	anti-parallel
Strand 5	G	38	39	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	8	13	first strand
Strand 2	G	66	77	anti-parallel
Strand 3	G	58	59	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	84	93	first strand
Strand 2	G	96	101	anti-parallel
Strand 3	G	104	109	anti-parallel
Strand 4	G	160	162	parallel
Strand 5	G	142	149	anti-parallel
Strand 6	G	84	93	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	452	453	first strand
Strand 2	Z	438	440	anti-parallel
Strand 3	Z	425	428	anti-parallel
Strand 4	Z	468	469	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	512	513	first strand
Strand 2	Z	500	504	anti-parallel
Strand 3	Z	489	495	anti-parallel
Strand 4	Z	477	480	anti-parallel
Strand 5	Z	518	519	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	567	571	first strand
Strand 2	Z	557	562	anti-parallel
Strand 3	Z	546	553	anti-parallel
Strand 4	Z	538	543	anti-parallel
Strand 5	Z	576	577	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	585	587	first strand
Strand 2	Z	593	595	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	635	639	first strand
Strand 2	Z	621	625	anti-parallel
Strand 3	Z	610	617	anti-parallel
Strand 4	Z	599	602	anti-parallel
Strand 5	Z	644	645	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	640	644	first strand
Strand 2	M	615	620	anti-parallel
Strand 3	M	665	670	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	805	811	first strand
Strand 2	M	794	799	anti-parallel
Strand 3	M	781	785	anti-parallel
Strand 4	M	847	851	parallel
Strand 5	M	881	885	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	971	972	first strand
Strand 2	M	1035	1036	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	1166	1175	first strand
Strand 2	M	1227	1232	anti-parallel
Strand 3	M	1237	1241	anti-parallel
Strand 4	M	1276	1280	parallel
Strand 5	M	1262	1271	anti-parallel
Strand 6	M	1166	1175	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9RTN

Analysis of interatomic Contacts of Structural Units in PDB entry:
9RTN