Analysis of interatomic Contacts of Structural Units in PDB entry:
9RTQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9RTQ entry

There are 5 chains in PDB entry 9RTQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ASP 449	SER 722
C	ASP 449	SER 722
D	GLU 62	ASN 382
A	GLU 62	ASN 382
F	ASP 448	ILE 617

There are106 helices in PDB entry 9RTQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	491	506	Right-handed alpha
Helix 2	AA2	B	537	543	Right-handed alpha
Helix 3	AA3	B	549	570	Right-handed alpha
Helix 4	AA4	B	578	580	Right-handed 310
Helix 5	AA5	B	621	627	Right-handed alpha
Helix 6	AA6	B	634	652	Right-handed alpha
Helix 7	AA7	B	661	671	Right-handed alpha
Helix 8	AA8	B	677	681	Right-handed 310
Helix 9	AA9	B	686	697	Right-handed alpha
Helix 10	AB1	B	700	704	Right-handed 310
Helix 11	AB2	B	706	721	Right-handed alpha
Helix 12	AB3	C	491	507	Right-handed alpha
Helix 13	AB4	C	537	543	Right-handed alpha
Helix 14	AB5	C	549	570	Right-handed alpha
Helix 15	AB6	C	578	580	Right-handed 310
Helix 16	AB7	C	594	598	Right-handed 310
Helix 17	AB8	C	621	627	Right-handed alpha
Helix 18	AB9	C	634	652	Right-handed alpha
Helix 19	AC1	C	661	671	Right-handed alpha
Helix 20	AC2	C	677	681	Right-handed 310
Helix 21	AC3	C	686	697	Right-handed alpha
Helix 22	AC4	C	700	704	Right-handed 310
Helix 23	AC5	C	706	722	Right-handed alpha
Helix 24	AC6	D	64	66	Right-handed 310
Helix 25	AC7	D	104	116	Right-handed alpha
Helix 26	AC8	D	117	121	Right-handed 310
Helix 27	AC9	D	150	159	Right-handed alpha
Helix 28	AD1	D	162	183	Right-handed alpha
Helix 29	AD2	D	192	194	Right-handed 310
Helix 30	AD3	D	212	219	Right-handed alpha
Helix 31	AD4	D	231	236	Right-handed alpha
Helix 32	AD5	D	241	259	Right-handed alpha
Helix 33	AD6	D	267	274	Right-handed alpha
Helix 34	AD7	D	309	320	Right-handed alpha
Helix 35	AD8	D	331	342	Right-handed alpha
Helix 36	AD9	D	351	357	Right-handed alpha
Helix 37	AE1	D	358	367	Right-handed alpha
Helix 38	AE2	D	370	379	Right-handed alpha
Helix 39	AE3	A	64	66	Right-handed 310
Helix 40	AE4	A	104	116	Right-handed alpha
Helix 41	AE5	A	117	121	Right-handed 310
Helix 42	AE6	A	151	159	Right-handed alpha
Helix 43	AE7	A	162	183	Right-handed alpha
Helix 44	AE8	A	192	194	Right-handed 310
Helix 45	AE9	A	212	219	Right-handed alpha
Helix 46	AF1	A	231	236	Right-handed alpha
Helix 47	AF2	A	241	259	Right-handed alpha
Helix 48	AF3	A	267	274	Right-handed alpha
Helix 49	AF4	A	309	320	Right-handed alpha
Helix 50	AF5	A	331	341	Right-handed alpha
Helix 51	AF6	A	351	357	Right-handed alpha
Helix 52	AF7	A	358	367	Right-handed alpha
Helix 53	AF8	A	370	379	Right-handed alpha
Helix 54	AF9	F	491	507	Right-handed alpha
Helix 55	AG1	F	536	543	Right-handed alpha
Helix 56	AG2	F	549	570	Right-handed alpha
Helix 57	AG3	F	578	580	Right-handed 310
Helix 58	AG4	F	586	588	Right-handed 310
Helix 59	AG5	F	621	627	Right-handed alpha
Helix 60	AG6	F	634	652	Right-handed alpha
Helix 61	AG7	F	661	671	Right-handed alpha
Helix 62	AG8	F	677	681	Right-handed 310
Helix 63	AG9	F	686	697	Right-handed alpha
Helix 64	AH1	F	700	704	Right-handed 310
Helix 65	AH2	F	706	721	Right-handed alpha
Helix 66	AH3	G	491	507	Right-handed alpha
Helix 67	AH4	G	537	543	Right-handed alpha
Helix 68	AH5	G	549	570	Right-handed alpha
Helix 69	AH6	G	578	580	Right-handed 310
Helix 70	AH7	G	621	627	Right-handed alpha
Helix 71	AH8	G	634	652	Right-handed alpha
Helix 72	AH9	G	661	671	Right-handed alpha
Helix 73	AI1	G	677	681	Right-handed 310
Helix 74	AI2	G	686	697	Right-handed alpha
Helix 75	AI3	G	700	704	Right-handed 310
Helix 76	AI4	G	706	722	Right-handed alpha
Helix 77	AI5	H	64	66	Right-handed 310
Helix 78	AI6	H	104	116	Right-handed alpha
Helix 79	AI7	H	117	121	Right-handed 310
Helix 80	AI8	H	150	159	Right-handed alpha
Helix 81	AI9	H	162	182	Right-handed alpha
Helix 82	AJ1	H	192	194	Right-handed 310
Helix 83	AJ2	H	212	219	Right-handed alpha
Helix 84	AJ3	H	231	236	Right-handed alpha
Helix 85	AJ4	H	241	259	Right-handed alpha
Helix 86	AJ5	H	267	274	Right-handed alpha
Helix 87	AJ6	H	309	320	Right-handed alpha
Helix 88	AJ7	H	331	342	Right-handed alpha
Helix 89	AJ8	H	351	357	Right-handed alpha
Helix 90	AJ9	H	358	367	Right-handed alpha
Helix 91	AK1	H	370	379	Right-handed alpha
Helix 92	AK2	E	64	66	Right-handed 310
Helix 93	AK3	E	104	116	Right-handed alpha
Helix 94	AK4	E	117	121	Right-handed 310
Helix 95	AK5	E	150	159	Right-handed alpha
Helix 96	AK6	E	162	183	Right-handed alpha
Helix 97	AK7	E	192	194	Right-handed 310
Helix 98	AK8	E	212	219	Right-handed alpha
Helix 99	AK9	E	231	236	Right-handed alpha
Helix 100	AL1	E	242	259	Right-handed alpha
Helix 101	AL2	E	267	274	Right-handed alpha
Helix 102	AL3	E	309	320	Right-handed alpha
Helix 103	AL4	E	331	342	Right-handed alpha
Helix 104	AL5	E	351	357	Right-handed alpha
Helix 105	AL6	E	358	367	Right-handed alpha
Helix 106	AL7	E	370	379	Right-handed alpha

There are 19 sheets in PDB entry 9RTQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	458	464	first strand
Strand 2	B	470	475	anti-parallel
Strand 3	B	479	484	anti-parallel
Strand 4	B	526	530	anti-parallel
Strand 5	B	516	520	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	534	536	first strand
Strand 2	B	582	585	anti-parallel
Strand 3	B	589	592	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	572	573	first strand
Strand 2	B	599	600	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	458	464	first strand
Strand 2	C	470	475	anti-parallel
Strand 3	C	479	484	anti-parallel
Strand 4	C	526	530	anti-parallel
Strand 5	C	516	520	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	534	536	first strand
Strand 2	C	582	585	anti-parallel
Strand 3	C	589	592	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	572	573	first strand
Strand 2	C	599	600	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	68	76	first strand
Strand 2	D	80	87	anti-parallel
Strand 3	D	92	100	anti-parallel
Strand 4	D	138	144	anti-parallel
Strand 5	D	129	135	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	196	198	first strand
Strand 2	D	204	206	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	76	first strand
Strand 2	A	80	87	anti-parallel
Strand 3	A	92	100	anti-parallel
Strand 4	A	138	143	anti-parallel
Strand 5	A	129	135	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	150	first strand
Strand 2	A	196	198	anti-parallel
Strand 3	A	204	206	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	458	464	first strand
Strand 2	F	470	475	anti-parallel
Strand 3	F	479	484	anti-parallel
Strand 4	F	526	530	anti-parallel
Strand 5	F	516	520	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	582	585	first strand
Strand 2	F	589	592	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	458	462	first strand
Strand 2	G	470	475	anti-parallel
Strand 3	G	479	484	anti-parallel
Strand 4	G	526	530	anti-parallel
Strand 5	G	516	520	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	534	536	first strand
Strand 2	G	582	585	anti-parallel
Strand 3	G	589	592	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	572	573	first strand
Strand 2	G	599	600	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	68	76	first strand
Strand 2	H	80	87	anti-parallel
Strand 3	H	92	100	anti-parallel
Strand 4	H	138	144	anti-parallel
Strand 5	H	129	135	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	196	198	first strand
Strand 2	H	204	206	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	68	76	first strand
Strand 2	E	80	87	anti-parallel
Strand 3	E	92	100	anti-parallel
Strand 4	E	138	143	anti-parallel
Strand 5	E	129	135	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	196	198	first strand
Strand 2	E	204	206	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9RTQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9RTQ