Analysis of interatomic Contacts of Structural Units in PDB entry:
9RTR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9RTR entry

There are 4 chains in PDB entry 9RTR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	GLU 41	LEU 381
C	SER 446	LEU 721
A	LEU 42	LEU 381
B	SER 447	LEU 721

There are 54 helices in PDB entry 9RTR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	43	59	Right-handed alpha
Helix 2	AA2	D	64	66	Right-handed 310
Helix 3	AA3	D	104	115	Right-handed alpha
Helix 4	AA4	D	116	120	Right-handed 310
Helix 5	AA5	D	151	159	Right-handed alpha
Helix 6	AA6	D	162	185	Right-handed alpha
Helix 7	AA7	D	192	194	Right-handed 310
Helix 8	AA8	D	212	219	Right-handed alpha
Helix 9	AA9	D	220	222	Right-handed 310
Helix 10	AB1	D	231	236	Right-handed alpha
Helix 11	AB2	D	241	259	Right-handed alpha
Helix 12	AB3	D	267	276	Right-handed alpha
Helix 13	AB4	D	309	320	Right-handed alpha
Helix 14	AB5	D	331	342	Right-handed alpha
Helix 15	AB6	D	351	357	Right-handed alpha
Helix 16	AB7	D	358	367	Right-handed alpha
Helix 17	AB8	D	370	379	Right-handed alpha
Helix 18	AB9	C	494	506	Right-handed alpha
Helix 19	AC1	C	537	543	Right-handed alpha
Helix 20	AC2	C	549	570	Right-handed alpha
Helix 21	AC3	C	616	620	Right-handed 310
Helix 22	AC4	C	621	627	Right-handed alpha
Helix 23	AC5	C	634	652	Right-handed alpha
Helix 24	AC6	C	661	671	Right-handed alpha
Helix 25	AC7	C	677	681	Right-handed 310
Helix 26	AC8	C	686	697	Right-handed alpha
Helix 27	AC9	C	700	704	Right-handed 310
Helix 28	AD1	C	706	721	Right-handed alpha
Helix 29	AD2	A	43	59	Right-handed alpha
Helix 30	AD3	A	64	66	Right-handed 310
Helix 31	AD4	A	104	115	Right-handed alpha
Helix 32	AD5	A	116	121	Right-handed 310
Helix 33	AD6	A	151	159	Right-handed alpha
Helix 34	AD7	A	162	185	Right-handed alpha
Helix 35	AD8	A	192	194	Right-handed 310
Helix 36	AD9	A	212	219	Right-handed alpha
Helix 37	AE1	A	231	236	Right-handed alpha
Helix 38	AE2	A	241	259	Right-handed alpha
Helix 39	AE3	A	267	275	Right-handed alpha
Helix 40	AE4	A	309	320	Right-handed alpha
Helix 41	AE5	A	331	342	Right-handed alpha
Helix 42	AE6	A	351	357	Right-handed alpha
Helix 43	AE7	A	358	367	Right-handed alpha
Helix 44	AE8	A	370	380	Right-handed alpha
Helix 45	AE9	B	493	506	Right-handed alpha
Helix 46	AF1	B	537	543	Right-handed alpha
Helix 47	AF2	B	549	570	Right-handed alpha
Helix 48	AF3	B	621	627	Right-handed alpha
Helix 49	AF4	B	634	652	Right-handed alpha
Helix 50	AF5	B	661	671	Right-handed alpha
Helix 51	AF6	B	677	681	Right-handed 310
Helix 52	AF7	B	686	697	Right-handed alpha
Helix 53	AF8	B	700	704	Right-handed 310
Helix 54	AF9	B	706	721	Right-handed alpha

There are 10 sheets in PDB entry 9RTR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	68	76	first strand
Strand 2	D	80	87	anti-parallel
Strand 3	D	92	100	anti-parallel
Strand 4	D	138	144	anti-parallel
Strand 5	D	129	135	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	150	first strand
Strand 2	D	196	198	anti-parallel
Strand 3	D	204	206	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	458	462	first strand
Strand 2	C	470	475	anti-parallel
Strand 3	C	479	484	anti-parallel
Strand 4	C	526	530	anti-parallel
Strand 5	C	516	520	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	534	536	first strand
Strand 2	C	582	585	anti-parallel
Strand 3	C	590	592	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	572	573	first strand
Strand 2	C	599	600	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	76	first strand
Strand 2	A	80	87	anti-parallel
Strand 3	A	92	100	anti-parallel
Strand 4	A	138	144	anti-parallel
Strand 5	A	129	135	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	150	first strand
Strand 2	A	196	198	anti-parallel
Strand 3	A	204	206	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	458	462	first strand
Strand 2	B	470	475	anti-parallel
Strand 3	B	479	484	anti-parallel
Strand 4	B	526	530	anti-parallel
Strand 5	B	516	520	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	534	536	first strand
Strand 2	B	582	585	anti-parallel
Strand 3	B	590	592	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	572	573	first strand
Strand 2	B	599	600	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9RTR

Analysis of interatomic Contacts of Structural Units in PDB entry:
9RTR