Analysis of interatomic Contacts of Structural Units in PDB entry:
9RTW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9RTW entry

There are 8 chains in PDB entry 9RTW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	LYS 43	LEU 636
D	LEU 18	SER 632
E	LYS 15	LYS 181
F	LYS 15	LYS 181
G	LYS 15	LYS 181
H	LYS 15	LYS 181
M	MET 1	THR 418
S	MET 1	GLY 153

There are130 helices in PDB entry 9RTW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	43	53	Right-handed alpha
Helix 2	AA2	B	55	72	Right-handed alpha
Helix 3	AA3	B	76	78	Right-handed 310
Helix 4	AA4	B	79	85	Right-handed alpha
Helix 5	AA5	B	86	89	Right-handed 310
Helix 6	AA6	B	91	106	Right-handed alpha
Helix 7	AA7	B	109	114	Right-handed alpha
Helix 8	AA8	B	116	124	Right-handed alpha
Helix 9	AA9	B	128	142	Right-handed alpha
Helix 10	AB1	B	144	146	Right-handed 310
Helix 11	AB2	B	147	160	Right-handed alpha
Helix 12	AB3	B	163	181	Right-handed alpha
Helix 13	AB4	B	184	197	Right-handed alpha
Helix 14	AB5	B	200	215	Right-handed alpha
Helix 15	AB6	B	218	224	Right-handed 310
Helix 16	AB7	B	225	233	Right-handed alpha
Helix 17	AB8	B	234	236	Right-handed 310
Helix 18	AB9	B	237	256	Right-handed alpha
Helix 19	AC1	B	294	305	Right-handed alpha
Helix 20	AC2	B	306	310	Right-handed 310
Helix 21	AC3	B	312	327	Right-handed alpha
Helix 22	AC4	B	328	333	Right-handed alpha
Helix 23	AC5	B	334	343	Right-handed alpha
Helix 24	AC6	B	346	364	Right-handed alpha
Helix 25	AC7	B	365	376	Right-handed 310
Helix 26	AC8	B	382	397	Right-handed alpha
Helix 27	AC9	B	401	413	Right-handed alpha
Helix 28	AD1	B	417	435	Right-handed alpha
Helix 29	AD2	B	438	450	Right-handed alpha
Helix 30	AD3	B	454	471	Right-handed alpha
Helix 31	AD4	B	476	487	Right-handed alpha
Helix 32	AD5	B	492	506	Right-handed alpha
Helix 33	AD6	B	512	525	Right-handed alpha
Helix 34	AD7	B	526	528	Right-handed 310
Helix 35	AD8	B	529	547	Right-handed alpha
Helix 36	AD9	B	547	564	Right-handed alpha
Helix 37	AE1	B	567	582	Right-handed alpha
Helix 38	AE2	B	588	593	Right-handed alpha
Helix 39	AE3	B	593	600	Right-handed alpha
Helix 40	AE4	B	611	615	Right-handed 310
Helix 41	AE5	B	621	627	Right-handed alpha
Helix 42	AE6	D	19	28	Right-handed alpha
Helix 43	AE7	D	31	48	Right-handed alpha
Helix 44	AE8	D	51	68	Right-handed alpha
Helix 45	AE9	D	72	74	Right-handed 310
Helix 46	AF1	D	75	84	Right-handed alpha
Helix 47	AF2	D	87	102	Right-handed alpha
Helix 48	AF3	D	106	110	Right-handed 310
Helix 49	AF4	D	111	121	Right-handed alpha
Helix 50	AF5	D	124	139	Right-handed alpha
Helix 51	AF6	D	140	155	Right-handed alpha
Helix 52	AF7	D	159	177	Right-handed alpha
Helix 53	AF8	D	180	191	Right-handed alpha
Helix 54	AF9	D	192	194	Right-handed 310
Helix 55	AG1	D	196	214	Right-handed alpha
Helix 56	AG2	D	215	220	Right-handed 310
Helix 57	AG3	D	221	232	Right-handed alpha
Helix 58	AG4	D	234	249	Right-handed alpha
Helix 59	AG5	D	252	270	Right-handed alpha
Helix 60	AG6	D	272	290	Right-handed alpha
Helix 61	AG7	D	296	314	Right-handed alpha
Helix 62	AG8	D	316	332	Right-handed alpha
Helix 63	AG9	D	334	340	Right-handed alpha
Helix 64	AH1	D	341	349	Right-handed alpha
Helix 65	AH2	D	353	368	Right-handed alpha
Helix 66	AH3	D	372	386	Right-handed alpha
Helix 67	AH4	D	388	410	Right-handed alpha
Helix 68	AH5	D	414	426	Right-handed alpha
Helix 69	AH6	D	433	448	Right-handed alpha
Helix 70	AH7	D	451	465	Right-handed alpha
Helix 71	AH8	D	465	470	Right-handed alpha
Helix 72	AH9	D	479	492	Right-handed alpha
Helix 73	AI1	D	493	496	Right-handed 310
Helix 74	AI2	D	498	507	Right-handed alpha
Helix 75	AI3	D	508	514	Right-handed 310
Helix 76	AI4	D	515	540	Right-handed alpha
Helix 77	AI5	D	542	557	Right-handed alpha
Helix 78	AI6	D	557	562	Right-handed alpha
Helix 79	AI7	D	565	587	Right-handed alpha
Helix 80	AI8	D	592	599	Right-handed alpha
Helix 81	AI9	D	611	615	Right-handed 310
Helix 82	AJ1	E	29	39	Right-handed alpha
Helix 83	AJ2	E	74	82	Right-handed 310
Helix 84	AJ3	E	96	98	Right-handed 310
Helix 85	AJ4	E	99	112	Right-handed alpha
Helix 86	AJ5	E	113	117	Right-handed 310
Helix 87	AJ6	E	135	144	Right-handed alpha
Helix 88	AJ7	E	145	148	Right-handed 310
Helix 89	AJ8	E	165	178	Right-handed alpha
Helix 90	AJ9	F	29	39	Right-handed alpha
Helix 91	AK1	F	74	82	Right-handed 310
Helix 92	AK2	F	96	98	Right-handed 310
Helix 93	AK3	F	99	112	Right-handed alpha
Helix 94	AK4	F	113	117	Right-handed 310
Helix 95	AK5	F	135	144	Right-handed alpha
Helix 96	AK6	F	145	148	Right-handed 310
Helix 97	AK7	F	165	178	Right-handed alpha
Helix 98	AK8	G	29	39	Right-handed alpha
Helix 99	AK9	G	74	82	Right-handed 310
Helix 100	AL1	G	96	98	Right-handed 310
Helix 101	AL2	G	99	112	Right-handed alpha
Helix 102	AL3	G	113	117	Right-handed 310
Helix 103	AL4	G	135	144	Right-handed alpha
Helix 104	AL5	G	145	148	Right-handed 310
Helix 105	AL6	G	165	178	Right-handed alpha
Helix 106	AL7	H	29	39	Right-handed alpha
Helix 107	AL8	H	74	82	Right-handed 310
Helix 108	AL9	H	96	98	Right-handed 310
Helix 109	AM1	H	99	112	Right-handed alpha
Helix 110	AM2	H	113	117	Right-handed 310
Helix 111	AM3	H	135	144	Right-handed alpha
Helix 112	AM4	H	145	148	Right-handed 310
Helix 113	AM5	H	165	178	Right-handed alpha
Helix 114	AM6	M	25	28	Right-handed 310
Helix 115	AM7	M	29	39	Right-handed alpha
Helix 116	AM8	M	41	45	Right-handed 310
Helix 117	AM9	M	75	95	Right-handed alpha
Helix 118	AN1	M	98	105	Right-handed alpha
Helix 119	AN2	M	105	116	Right-handed alpha
Helix 120	AN3	M	126	134	Right-handed alpha
Helix 121	AN4	M	138	149	Right-handed alpha
Helix 122	AN5	M	158	163	Right-handed alpha
Helix 123	AN6	M	224	226	Right-handed 310
Helix 124	AN7	M	238	246	Right-handed alpha
Helix 125	AN8	S	24	41	Right-handed alpha
Helix 126	AN9	S	53	59	Right-handed 310
Helix 127	AO1	S	82	102	Right-handed alpha
Helix 128	AO2	S	105	112	Right-handed alpha
Helix 129	AO3	S	112	123	Right-handed alpha
Helix 130	AO4	S	133	153	Right-handed alpha

There are 11 sheets in PDB entry 9RTW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	51	58	first strand
Strand 2	E	61	68	anti-parallel
Strand 3	E	16	24	parallel
Strand 4	E	87	93	parallel
Strand 5	E	120	126	parallel
Strand 6	E	153	157	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	51	58	first strand
Strand 2	F	61	68	anti-parallel
Strand 3	F	16	24	parallel
Strand 4	F	87	93	parallel
Strand 5	F	120	126	parallel
Strand 6	F	153	157	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	51	58	first strand
Strand 2	G	61	68	anti-parallel
Strand 3	G	16	24	parallel
Strand 4	G	87	93	parallel
Strand 5	G	120	126	parallel
Strand 6	G	153	157	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	51	58	first strand
Strand 2	H	61	68	anti-parallel
Strand 3	H	16	24	parallel
Strand 4	H	87	93	parallel
Strand 5	H	120	126	parallel
Strand 6	H	153	157	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	14	19	first strand
Strand 2	M	2	9	anti-parallel
Strand 3	M	64	70	anti-parallel
Strand 4	M	55	61	anti-parallel
Strand 5	M	48	50	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	117	118	first strand
Strand 2	M	121	122	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	228	233	first strand
Strand 2	M	255	264	anti-parallel
Strand 3	M	197	211	anti-parallel
Strand 4	M	178	191	anti-parallel
Strand 5	M	402	416	parallel
Strand 6	M	373	380	anti-parallel
Strand 7	M	305	313	anti-parallel
Strand 8	M	338	344	anti-parallel
Strand 9	M	329	333	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	248	250	first strand
Strand 2	M	217	222	anti-parallel
Strand 3	M	389	395	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	274	282	first strand
Strand 2	M	288	297	anti-parallel
Strand 3	M	353	360	anti-parallel
Strand 4	M	318	325	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	14	19	first strand
Strand 2	S	2	9	anti-parallel
Strand 3	S	71	78	anti-parallel
Strand 4	S	61	68	anti-parallel
Strand 5	S	49	51	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	124	125	first strand
Strand 2	S	128	129	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9RTW

Analysis of interatomic Contacts of Structural Units in PDB entry:
9RTW