Analysis of interatomic Contacts of Structural Units in PDB entry:
9RTZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9RTZ entry

There are 14 chains in PDB entry 9RTZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
b	LYS 43	LEU 636
d	LEU 18	SER 632
I	LYS 15	LYS 181
J	LYS 15	LYS 181
G	LYS 15	LYS 181
H	LYS 15	LYS 181
m	MET 1	THR 418
s	MET 1	GLY 153
B	LYS 43	LEU 636
D	LEU 18	SER 632
E	LYS 15	LYS 181
F	LYS 15	LYS 181
M	MET 1	THR 418
S	MET 1	GLY 153

There are244 helices in PDB entry 9RTZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	b	43	53	Right-handed alpha
Helix 2	AA2	b	55	72	Right-handed alpha
Helix 3	AA3	b	76	78	Right-handed 310
Helix 4	AA4	b	79	85	Right-handed alpha
Helix 5	AA5	b	86	89	Right-handed 310
Helix 6	AA6	b	91	106	Right-handed alpha
Helix 7	AA7	b	109	114	Right-handed alpha
Helix 8	AA8	b	116	124	Right-handed alpha
Helix 9	AA9	b	128	142	Right-handed alpha
Helix 10	AB1	b	144	146	Right-handed 310
Helix 11	AB2	b	147	160	Right-handed alpha
Helix 12	AB3	b	163	181	Right-handed alpha
Helix 13	AB4	b	184	197	Right-handed alpha
Helix 14	AB5	b	200	215	Right-handed alpha
Helix 15	AB6	b	218	224	Right-handed 310
Helix 16	AB7	b	225	233	Right-handed alpha
Helix 17	AB8	b	234	236	Right-handed 310
Helix 18	AB9	b	237	256	Right-handed alpha
Helix 19	AC1	b	294	305	Right-handed alpha
Helix 20	AC2	b	306	310	Right-handed 310
Helix 21	AC3	b	312	327	Right-handed alpha
Helix 22	AC4	b	328	333	Right-handed alpha
Helix 23	AC5	b	334	343	Right-handed alpha
Helix 24	AC6	b	346	364	Right-handed alpha
Helix 25	AC7	b	365	376	Right-handed 310
Helix 26	AC8	b	382	397	Right-handed alpha
Helix 27	AC9	b	401	413	Right-handed alpha
Helix 28	AD1	b	417	435	Right-handed alpha
Helix 29	AD2	b	438	450	Right-handed alpha
Helix 30	AD3	b	454	471	Right-handed alpha
Helix 31	AD4	b	476	487	Right-handed alpha
Helix 32	AD5	b	492	506	Right-handed alpha
Helix 33	AD6	b	512	525	Right-handed alpha
Helix 34	AD7	b	526	528	Right-handed 310
Helix 35	AD8	b	529	547	Right-handed alpha
Helix 36	AD9	b	547	564	Right-handed alpha
Helix 37	AE1	b	567	582	Right-handed alpha
Helix 38	AE2	b	588	593	Right-handed alpha
Helix 39	AE3	b	593	600	Right-handed alpha
Helix 40	AE4	b	611	615	Right-handed 310
Helix 41	AE5	b	621	627	Right-handed alpha
Helix 42	AE6	d	19	28	Right-handed alpha
Helix 43	AE7	d	31	48	Right-handed alpha
Helix 44	AE8	d	51	68	Right-handed alpha
Helix 45	AE9	d	72	74	Right-handed 310
Helix 46	AF1	d	75	84	Right-handed alpha
Helix 47	AF2	d	87	102	Right-handed alpha
Helix 48	AF3	d	106	110	Right-handed 310
Helix 49	AF4	d	111	121	Right-handed alpha
Helix 50	AF5	d	124	139	Right-handed alpha
Helix 51	AF6	d	140	155	Right-handed alpha
Helix 52	AF7	d	159	177	Right-handed alpha
Helix 53	AF8	d	180	191	Right-handed alpha
Helix 54	AF9	d	192	194	Right-handed 310
Helix 55	AG1	d	196	214	Right-handed alpha
Helix 56	AG2	d	215	220	Right-handed 310
Helix 57	AG3	d	221	232	Right-handed alpha
Helix 58	AG4	d	234	249	Right-handed alpha
Helix 59	AG5	d	252	270	Right-handed alpha
Helix 60	AG6	d	272	290	Right-handed alpha
Helix 61	AG7	d	296	314	Right-handed alpha
Helix 62	AG8	d	316	332	Right-handed alpha
Helix 63	AG9	d	334	340	Right-handed alpha
Helix 64	AH1	d	341	349	Right-handed alpha
Helix 65	AH2	d	353	368	Right-handed alpha
Helix 66	AH3	d	372	386	Right-handed alpha
Helix 67	AH4	d	388	410	Right-handed alpha
Helix 68	AH5	d	414	426	Right-handed alpha
Helix 69	AH6	d	433	448	Right-handed alpha
Helix 70	AH7	d	451	465	Right-handed alpha
Helix 71	AH8	d	465	470	Right-handed alpha
Helix 72	AH9	d	479	492	Right-handed alpha
Helix 73	AI1	d	493	496	Right-handed 310
Helix 74	AI2	d	498	507	Right-handed alpha
Helix 75	AI3	d	508	514	Right-handed 310
Helix 76	AI4	d	515	540	Right-handed alpha
Helix 77	AI5	d	542	557	Right-handed alpha
Helix 78	AI6	d	557	562	Right-handed alpha
Helix 79	AI7	d	565	587	Right-handed alpha
Helix 80	AI8	d	592	599	Right-handed alpha
Helix 81	AI9	d	611	615	Right-handed 310
Helix 82	AJ1	I	29	39	Right-handed alpha
Helix 83	AJ2	I	74	82	Right-handed 310
Helix 84	AJ3	I	96	98	Right-handed 310
Helix 85	AJ4	I	99	112	Right-handed alpha
Helix 86	AJ5	I	113	117	Right-handed 310
Helix 87	AJ6	I	135	144	Right-handed alpha
Helix 88	AJ7	I	145	148	Right-handed 310
Helix 89	AJ8	I	165	178	Right-handed alpha
Helix 90	AJ9	J	29	39	Right-handed alpha
Helix 91	AK1	J	74	82	Right-handed 310
Helix 92	AK2	J	96	98	Right-handed 310
Helix 93	AK3	J	99	112	Right-handed alpha
Helix 94	AK4	J	113	117	Right-handed 310
Helix 95	AK5	J	135	144	Right-handed alpha
Helix 96	AK6	J	145	148	Right-handed 310
Helix 97	AK7	J	165	178	Right-handed alpha
Helix 98	AK8	G	29	39	Right-handed alpha
Helix 99	AK9	G	74	82	Right-handed 310
Helix 100	AL1	G	96	98	Right-handed 310
Helix 101	AL2	G	99	112	Right-handed alpha
Helix 102	AL3	G	113	117	Right-handed 310
Helix 103	AL4	G	135	144	Right-handed alpha
Helix 104	AL5	G	145	148	Right-handed 310
Helix 105	AL6	G	165	178	Right-handed alpha
Helix 106	AL7	H	29	39	Right-handed alpha
Helix 107	AL8	H	74	82	Right-handed 310
Helix 108	AL9	H	96	98	Right-handed 310
Helix 109	AM1	H	99	112	Right-handed alpha
Helix 110	AM2	H	113	117	Right-handed 310
Helix 111	AM3	H	135	144	Right-handed alpha
Helix 112	AM4	H	145	148	Right-handed 310
Helix 113	AM5	H	165	178	Right-handed alpha
Helix 114	AM6	m	25	28	Right-handed 310
Helix 115	AM7	m	29	39	Right-handed alpha
Helix 116	AM8	m	41	45	Right-handed 310
Helix 117	AM9	m	75	95	Right-handed alpha
Helix 118	AN1	m	98	105	Right-handed alpha
Helix 119	AN2	m	105	116	Right-handed alpha
Helix 120	AN3	m	126	134	Right-handed alpha
Helix 121	AN4	m	138	149	Right-handed alpha
Helix 122	AN5	m	158	163	Right-handed alpha
Helix 123	AN6	m	224	226	Right-handed 310
Helix 124	AN7	m	238	246	Right-handed alpha
Helix 125	AN8	s	24	41	Right-handed alpha
Helix 126	AN9	s	53	59	Right-handed 310
Helix 127	AO1	s	82	102	Right-handed alpha
Helix 128	AO2	s	105	112	Right-handed alpha
Helix 129	AO3	s	112	123	Right-handed alpha
Helix 130	AO4	s	133	153	Right-handed alpha
Helix 131	AO5	B	44	53	Right-handed alpha
Helix 132	AO6	B	55	72	Right-handed alpha
Helix 133	AO7	B	76	78	Right-handed 310
Helix 134	AO8	B	79	85	Right-handed alpha
Helix 135	AO9	B	86	89	Right-handed 310
Helix 136	AP1	B	91	106	Right-handed alpha
Helix 137	AP2	B	109	114	Right-handed alpha
Helix 138	AP3	B	116	124	Right-handed alpha
Helix 139	AP4	B	128	142	Right-handed alpha
Helix 140	AP5	B	144	146	Right-handed 310
Helix 141	AP6	B	147	160	Right-handed alpha
Helix 142	AP7	B	163	181	Right-handed alpha
Helix 143	AP8	B	184	197	Right-handed alpha
Helix 144	AP9	B	200	215	Right-handed alpha
Helix 145	AQ1	B	218	224	Right-handed 310
Helix 146	AQ2	B	225	233	Right-handed alpha
Helix 147	AQ3	B	234	236	Right-handed 310
Helix 148	AQ4	B	237	256	Right-handed alpha
Helix 149	AQ5	B	294	305	Right-handed alpha
Helix 150	AQ6	B	306	310	Right-handed 310
Helix 151	AQ7	B	312	327	Right-handed alpha
Helix 152	AQ8	B	328	333	Right-handed alpha
Helix 153	AQ9	B	334	343	Right-handed alpha
Helix 154	AR1	B	346	364	Right-handed alpha
Helix 155	AR2	B	365	376	Right-handed 310
Helix 156	AR3	B	382	397	Right-handed alpha
Helix 157	AR4	B	401	413	Right-handed alpha
Helix 158	AR5	B	417	435	Right-handed alpha
Helix 159	AR6	B	438	450	Right-handed alpha
Helix 160	AR7	B	454	471	Right-handed alpha
Helix 161	AR8	B	476	487	Right-handed alpha
Helix 162	AR9	B	492	506	Right-handed alpha
Helix 163	AS1	B	512	525	Right-handed alpha
Helix 164	AS2	B	526	528	Right-handed 310
Helix 165	AS3	B	529	547	Right-handed alpha
Helix 166	AS4	B	547	564	Right-handed alpha
Helix 167	AS5	B	567	582	Right-handed alpha
Helix 168	AS6	B	588	593	Right-handed alpha
Helix 169	AS7	B	593	600	Right-handed alpha
Helix 170	AS8	B	611	615	Right-handed 310
Helix 171	AS9	B	621	627	Right-handed alpha
Helix 172	AT1	D	19	28	Right-handed alpha
Helix 173	AT2	D	31	48	Right-handed alpha
Helix 174	AT3	D	51	68	Right-handed alpha
Helix 175	AT4	D	72	74	Right-handed 310
Helix 176	AT5	D	75	84	Right-handed alpha
Helix 177	AT6	D	87	102	Right-handed alpha
Helix 178	AT7	D	106	110	Right-handed 310
Helix 179	AT8	D	111	121	Right-handed alpha
Helix 180	AT9	D	124	139	Right-handed alpha
Helix 181	AU1	D	140	155	Right-handed alpha
Helix 182	AU2	D	159	177	Right-handed alpha
Helix 183	AU3	D	180	191	Right-handed alpha
Helix 184	AU4	D	192	194	Right-handed 310
Helix 185	AU5	D	196	214	Right-handed alpha
Helix 186	AU6	D	215	220	Right-handed 310
Helix 187	AU7	D	221	232	Right-handed alpha
Helix 188	AU8	D	234	249	Right-handed alpha
Helix 189	AU9	D	252	270	Right-handed alpha
Helix 190	AV1	D	272	290	Right-handed alpha
Helix 191	AV2	D	296	314	Right-handed alpha
Helix 192	AV3	D	316	332	Right-handed alpha
Helix 193	AV4	D	334	340	Right-handed alpha
Helix 194	AV5	D	341	349	Right-handed alpha
Helix 195	AV6	D	353	368	Right-handed alpha
Helix 196	AV7	D	372	386	Right-handed alpha
Helix 197	AV8	D	388	410	Right-handed alpha
Helix 198	AV9	D	414	426	Right-handed alpha
Helix 199	AW1	D	433	448	Right-handed alpha
Helix 200	AW2	D	451	465	Right-handed alpha
Helix 201	AW3	D	465	470	Right-handed alpha
Helix 202	AW4	D	479	492	Right-handed alpha
Helix 203	AW5	D	493	496	Right-handed 310
Helix 204	AW6	D	498	507	Right-handed alpha
Helix 205	AW7	D	508	514	Right-handed 310
Helix 206	AW8	D	515	540	Right-handed alpha
Helix 207	AW9	D	542	557	Right-handed alpha
Helix 208	AX1	D	557	562	Right-handed alpha
Helix 209	AX2	D	565	587	Right-handed alpha
Helix 210	AX3	D	592	599	Right-handed alpha
Helix 211	AX4	D	611	615	Right-handed 310
Helix 212	AX5	E	29	39	Right-handed alpha
Helix 213	AX6	E	74	82	Right-handed 310
Helix 214	AX7	E	96	98	Right-handed 310
Helix 215	AX8	E	99	112	Right-handed alpha
Helix 216	AX9	E	113	117	Right-handed 310
Helix 217	AY1	E	135	144	Right-handed alpha
Helix 218	AY2	E	145	148	Right-handed 310
Helix 219	AY3	E	165	178	Right-handed alpha
Helix 220	AY4	F	29	39	Right-handed alpha
Helix 221	AY5	F	74	82	Right-handed 310
Helix 222	AY6	F	96	98	Right-handed 310
Helix 223	AY7	F	99	112	Right-handed alpha
Helix 224	AY8	F	113	117	Right-handed 310
Helix 225	AY9	F	135	144	Right-handed alpha
Helix 226	AZ1	F	145	148	Right-handed 310
Helix 227	AZ2	F	165	178	Right-handed alpha
Helix 228	AZ3	M	25	28	Right-handed 310
Helix 229	AZ4	M	29	39	Right-handed alpha
Helix 230	AZ5	M	41	45	Right-handed 310
Helix 231	AZ6	M	75	95	Right-handed alpha
Helix 232	AZ7	M	98	105	Right-handed alpha
Helix 233	AZ8	M	105	116	Right-handed alpha
Helix 234	AZ9	M	126	134	Right-handed alpha
Helix 235	BA1	M	138	149	Right-handed alpha
Helix 236	BA2	M	158	163	Right-handed alpha
Helix 237	BA3	M	224	226	Right-handed 310
Helix 238	BA4	M	238	246	Right-handed alpha
Helix 239	BA5	S	24	41	Right-handed alpha
Helix 240	BA6	S	53	59	Right-handed 310
Helix 241	BA7	S	82	102	Right-handed alpha
Helix 242	BA8	S	105	112	Right-handed alpha
Helix 243	BA9	S	112	123	Right-handed alpha
Helix 244	BB1	S	133	153	Right-handed alpha

There are 20 sheets in PDB entry 9RTZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	51	58	first strand
Strand 2	I	61	68	anti-parallel
Strand 3	I	16	24	parallel
Strand 4	I	87	93	parallel
Strand 5	I	120	126	parallel
Strand 6	I	153	157	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	51	58	first strand
Strand 2	J	61	68	anti-parallel
Strand 3	J	16	24	parallel
Strand 4	J	87	93	parallel
Strand 5	J	120	126	parallel
Strand 6	J	153	157	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	51	58	first strand
Strand 2	G	61	68	anti-parallel
Strand 3	G	16	24	parallel
Strand 4	G	87	93	parallel
Strand 5	G	120	126	parallel
Strand 6	G	153	157	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	51	58	first strand
Strand 2	H	61	68	anti-parallel
Strand 3	H	16	24	parallel
Strand 4	H	87	93	parallel
Strand 5	H	120	126	parallel
Strand 6	H	153	157	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	14	19	first strand
Strand 2	m	2	9	anti-parallel
Strand 3	m	64	70	anti-parallel
Strand 4	m	55	61	anti-parallel
Strand 5	m	48	50	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	117	118	first strand
Strand 2	m	121	122	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	228	233	first strand
Strand 2	m	255	264	anti-parallel
Strand 3	m	197	211	anti-parallel
Strand 4	m	178	191	anti-parallel
Strand 5	m	402	416	parallel
Strand 6	m	373	380	anti-parallel
Strand 7	m	305	313	anti-parallel
Strand 8	m	338	344	anti-parallel
Strand 9	m	329	333	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	248	250	first strand
Strand 2	m	217	222	anti-parallel
Strand 3	m	389	395	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	274	282	first strand
Strand 2	m	288	297	anti-parallel
Strand 3	m	353	360	anti-parallel
Strand 4	m	318	325	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	s	14	19	first strand
Strand 2	s	2	9	anti-parallel
Strand 3	s	71	78	anti-parallel
Strand 4	s	61	68	anti-parallel
Strand 5	s	49	51	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	s	124	125	first strand
Strand 2	s	128	129	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	51	58	first strand
Strand 2	E	61	68	anti-parallel
Strand 3	E	16	24	parallel
Strand 4	E	87	93	parallel
Strand 5	E	120	126	parallel
Strand 6	E	153	157	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	51	58	first strand
Strand 2	F	61	68	anti-parallel
Strand 3	F	16	24	parallel
Strand 4	F	87	93	parallel
Strand 5	F	120	126	parallel
Strand 6	F	153	157	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	14	19	first strand
Strand 2	M	2	9	anti-parallel
Strand 3	M	64	70	anti-parallel
Strand 4	M	55	61	anti-parallel
Strand 5	M	48	50	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	117	118	first strand
Strand 2	M	121	122	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	228	233	first strand
Strand 2	M	255	264	anti-parallel
Strand 3	M	197	211	anti-parallel
Strand 4	M	178	191	anti-parallel
Strand 5	M	402	416	parallel
Strand 6	M	373	380	anti-parallel
Strand 7	M	305	313	anti-parallel
Strand 8	M	338	344	anti-parallel
Strand 9	M	329	333	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	248	250	first strand
Strand 2	M	217	222	anti-parallel
Strand 3	M	389	395	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	274	282	first strand
Strand 2	M	288	297	anti-parallel
Strand 3	M	353	360	anti-parallel
Strand 4	M	318	325	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	14	19	first strand
Strand 2	S	2	9	anti-parallel
Strand 3	S	71	78	anti-parallel
Strand 4	S	61	68	anti-parallel
Strand 5	S	49	51	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	124	125	first strand
Strand 2	S	128	129	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9RTZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9RTZ