Analysis of interatomic Contacts of Structural Units in PDB entry:
9RUB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9RUB entry

There are 2 chains in PDB entry 9RUB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2THR 460
B
 ASP 2ASP 459
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 9RUB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA
A
14 20Right-handed alpha
Helix 2
AB
A
38 49Right-handed alpha
Helix 3
AC
A
101 109Right-handed alpha
Helix 4
AD
A
130 133Right-handed alpha
Helix 5
AE
A
144 150Right-handed alpha
Helix 6
A1
A
173 184Right-handed alpha
Helix 7
A2
A
204 222Right-handed alpha
Helix 8
A3
A
235 251Right-handed alpha
Helix 9
A4
A
269 278Right-handed alpha
Helix 10
AF
A
292 295Right-handed alpha
Helix 11
A5
A
305 315Right-handed alpha
Helix 12
A6
A
337 344Right-handed alpha
Helix 13
A7
A
375 378Right-handed 310
Helix 14
A8
A
403 419Right-handed alpha
Helix 15
AG
A
423 429Right-handed alpha
Helix 16
AH
A
431 440Right-handed alpha
Helix 17
AI
A
442 448Right-handed alpha
Helix 18
AJ
A
451 455Right-handed alpha
Helix 19
BA
B
14 20Right-handed alpha
Helix 20
BB
B
38 49Right-handed alpha
Helix 21
BC
B
101 109Right-handed alpha
Helix 22
BD
B
130 133Right-handed alpha
Helix 23
BE
B
144 150Right-handed alpha
Helix 24
B1
B
173 184Right-handed alpha
Helix 25
B2
B
204 222Right-handed alpha
Helix 26
B3
B
235 251Right-handed alpha
Helix 27
B4
B
269 278Right-handed alpha
Helix 28
BF
B
292 295Right-handed alpha
Helix 29
B5
B
305 315Right-handed alpha
Helix 30
B6
B
337 344Right-handed alpha
Helix 31
B6
B
375 383Right-handed alpha
Helix 32
B8
B
403 419Right-handed alpha
Helix 33
BG
B
423 429Right-handed alpha
Helix 34
BH
B
431 440Right-handed alpha
Helix 35
BI
B
442 448Right-handed alpha
Helix 36
BJ
B
451 455Right-handed alpha
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There are 4 sheets in PDB entry 9RUB. Click on sheet of interest to get list of strands forming it: ANT, CTA, BNT, CTB,

There are 5 strands in ANT sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 10first strand
Strand 2
A
69 75parallel
Strand 3
A
79 86anti-parallel
Strand 4
A
23 32anti-parallel
Strand 5
A
117 127anti-parallel
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There are 9 strands in CTA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 164first strand
Strand 2
A
189 191parallel
Strand 3
A
227 231parallel
Strand 4
A
258 263parallel
Strand 5
A
284 287parallel
Strand 6
A
319 321parallel
Strand 7
A
364 369parallel
Strand 8
A
389 392parallel
Strand 9
A
160 164parallel
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There are 5 strands in BNT sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 10first strand
Strand 2
B
69 75parallel
Strand 3
B
79 86anti-parallel
Strand 4
B
23 32anti-parallel
Strand 5
B
117 127anti-parallel
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There are 9 strands in CTB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 164first strand
Strand 2
B
189 191parallel
Strand 3
B
227 231parallel
Strand 4
B
258 263parallel
Strand 5
B
284 287parallel
Strand 6
B
319 321parallel
Strand 7
B
364 369parallel
Strand 8
A
389 392parallel
Strand 9
B
160 164parallel
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