Analysis of interatomic Contacts of Structural Units in PDB entry:
9RUI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9RUI entry

There are 2 chains in PDB entry 9RUI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP -9TYR 419
B
 VAL 5TYR 419
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 50 helices in PDB entry 9RUI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-7 -3Right-handed 310
Helix 2
AA2
A
7 21Right-handed alpha
Helix 3
AA3
A
35 42Right-handed alpha
Helix 4
AA4
A
45 52Right-handed alpha
Helix 5
AA5
A
52 68Right-handed alpha
Helix 6
AA6
A
80 87Right-handed alpha
Helix 7
AA7
A
91 106Right-handed alpha
Helix 8
AA8
A
107 114Right-handed alpha
Helix 9
AA9
A
141 143Right-handed 310
Helix 10
AB1
A
144 151Right-handed alpha
Helix 11
AB2
A
151 159Right-handed alpha
Helix 12
AB3
A
159 165Right-handed alpha
Helix 13
AB4
A
166 169Right-handed 310
Helix 14
AB5
A
173 204Right-handed alpha
Helix 15
AB6
A
216 225Right-handed alpha
Helix 16
AB7
A
227 238Right-handed alpha
Helix 17
AB8
A
238 269Right-handed alpha
Helix 18
AB9
A
278 283Right-handed 310
Helix 19
AC1
A
284 292Right-handed alpha
Helix 20
AC2
A
292 306Right-handed alpha
Helix 21
AC3
A
318 328Right-handed 310
Helix 22
AC4
A
341 350Right-handed alpha
Helix 23
AC5
A
360 367Right-handed alpha
Helix 24
AC6
A
368 384Right-handed alpha
Helix 25
AC7
A
402 417Right-handed alpha
Helix 26
AC8
B
7 21Right-handed alpha
Helix 27
AC9
B
35 42Right-handed alpha
Helix 28
AD1
B
45 52Right-handed alpha
Helix 29
AD2
B
52 68Right-handed alpha
Helix 30
AD3
B
80 87Right-handed alpha
Helix 31
AD4
B
91 100Right-handed alpha
Helix 32
AD5
B
100 106Right-handed alpha
Helix 33
AD6
B
107 114Right-handed alpha
Helix 34
AD7
B
141 143Right-handed 310
Helix 35
AD8
B
144 151Right-handed alpha
Helix 36
AD9
B
151 159Right-handed alpha
Helix 37
AE1
B
159 165Right-handed alpha
Helix 38
AE2
B
166 169Right-handed 310
Helix 39
AE3
B
173 204Right-handed alpha
Helix 40
AE4
B
216 225Right-handed alpha
Helix 41
AE5
B
227 238Right-handed alpha
Helix 42
AE6
B
238 269Right-handed alpha
Helix 43
AE7
B
278 283Right-handed 310
Helix 44
AE8
B
284 292Right-handed alpha
Helix 45
AE9
B
292 306Right-handed alpha
Helix 46
AF1
B
318 328Right-handed 310
Helix 47
AF2
B
341 350Right-handed alpha
Helix 48
AF3
B
360 367Right-handed alpha
Helix 49
AF4
B
368 384Right-handed alpha
Helix 50
AF5
B
402 417Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 9RUI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 33first strand
Strand 2
A
71 73parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 119first strand
Strand 2
A
132 133anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 277first strand
Strand 2
A
309 314parallel
Strand 3
A
334 337parallel
Strand 4
A
354 357parallel
Strand 5
A
389 391parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 33first strand
Strand 2
B
71 73parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 119first strand
Strand 2
B
132 133anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
272 277first strand
Strand 2
B
309 314parallel
Strand 3
B
334 337parallel
Strand 4
B
354 357parallel
Strand 5
B
389 391parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il