Analysis of interatomic Contacts of Structural Units in PDB entry:
9RUP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9RUP entry

There are 10 chains in PDB entry 9RUP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 3	SER 209
B	GLY 1	ASP 242
E	ILE 1	MET 99
C	HIS 1	PRO 265
D	PHE 1	TYR 9
a	GLN 1	SER 205
b	GLY 1	TRP 238
e	ILE 1	MET 99
c	HIS 1	PRO 265
d	PHE 1	TYR 9

There are 18 helices in PDB entry 9RUP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	80	84	Right-handed 310
Helix 2	AA2	B	114	118	Right-handed 310
Helix 3	AA3	B	130	135	Right-handed alpha
Helix 4	AA4	B	196	201	Right-handed alpha
Helix 5	AA5	C	54	61	Right-handed alpha
Helix 6	AA6	C	64	76	Right-handed alpha
Helix 7	AA7	C	78	83	Right-handed alpha
Helix 8	AA8	C	138	148	Right-handed alpha
Helix 9	AA9	C	149	160	Right-handed alpha
Helix 10	AB1	C	160	174	Right-handed alpha
Helix 11	AB2	b	80	84	Right-handed 310
Helix 12	AB3	b	195	201	Right-handed alpha
Helix 13	AB4	c	54	61	Right-handed alpha
Helix 14	AB5	c	64	76	Right-handed alpha
Helix 15	AB6	c	78	83	Right-handed alpha
Helix 16	AB7	c	137	148	Right-handed alpha
Helix 17	AB8	c	149	160	Right-handed alpha
Helix 18	AB9	c	160	174	Right-handed alpha

There are 32 sheets in PDB entry 9RUP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	11	first strand
Strand 2	A	109	112	parallel
Strand 3	A	87	92	anti-parallel
Strand 4	A	32	35	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	19	first strand
Strand 2	A	76	77	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	56	first strand
Strand 2	A	64	65	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	128	first strand
Strand 2	A	136	137	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	5	first strand
Strand 2	B	19	21	anti-parallel
Strand 3	B	72	76	anti-parallel
Strand 4	B	62	66	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	55	first strand
Strand 2	B	45	47	anti-parallel
Strand 3	B	29	34	anti-parallel
Strand 4	B	87	92	anti-parallel
Strand 5	B	102	103	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	126	first strand
Strand 2	B	142	146	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	159	first strand
Strand 2	B	206	208	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	39	41	first strand
Strand 2	E	78	80	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	8	first strand
Strand 2	C	21	24	anti-parallel
Strand 3	C	32	34	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	94	first strand
Strand 2	C	113	116	anti-parallel
Strand 3	C	119	123	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	100	first strand
Strand 2	C	109	110	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	186	first strand
Strand 2	C	202	206	anti-parallel
Strand 3	C	239	242	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	191	192	first strand
Strand 2	C	196	197	anti-parallel
Strand 3	C	247	248	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	211	212	first strand
Strand 2	C	260	261	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	2	4	first strand
Strand 2	a	23	25	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	10	11	first strand
Strand 2	a	111	112	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	18	19	first strand
Strand 2	a	76	77	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	31	35	first strand
Strand 2	a	89	93	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	55	56	first strand
Strand 2	a	64	65	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	123	128	first strand
Strand 2	a	136	141	anti-parallel
Strand 3	a	178	180	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	4	5	first strand
Strand 2	b	18	21	anti-parallel
Strand 3	b	72	75	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	32	34	first strand
Strand 2	b	87	91	anti-parallel
Strand 3	b	102	103	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	122	126	first strand
Strand 2	b	141	146	anti-parallel
Strand 3	b	190	192	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	21	22	first strand
Strand 2	e	69	70	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	39	41	first strand
Strand 2	e	78	80	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	55	56	first strand
Strand 2	e	62	63	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	2	3	first strand
Strand 2	c	99	100	anti-parallel
Strand 3	c	109	110	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	33	34	first strand
Strand 2	c	19	23	anti-parallel
Strand 3	c	6	10	anti-parallel
Strand 4	c	93	96	anti-parallel
Strand 5	c	113	116	anti-parallel
Strand 6	c	119	123	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	184	188	first strand
Strand 2	c	200	206	anti-parallel
Strand 3	c	239	242	anti-parallel
Strand 4	c	232	233	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	196	197	first strand
Strand 2	c	247	248	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	211	217	first strand
Strand 2	c	255	261	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9RUP

Analysis of interatomic Contacts of Structural Units in PDB entry:
9RUP