Analysis of interatomic Contacts of Structural Units in PDB entry:
9RUW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9RUW entry

There are 2 chains in PDB entry 9RUW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 24	LEU 548
B	THR 24	MET 547

There are 50 helices in PDB entry 9RUW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	33	Right-handed alpha
Helix 2	AA2	A	47	53	Right-handed alpha
Helix 3	AA3	A	57	61	Right-handed 310
Helix 4	AA4	A	76	91	Right-handed alpha
Helix 5	AA5	A	131	133	Right-handed 310
Helix 6	AA6	A	143	155	Right-handed alpha
Helix 7	AA7	A	169	176	Right-handed alpha
Helix 8	AA8	A	182	187	Right-handed alpha
Helix 9	AA9	A	189	191	Right-handed 310
Helix 10	AB1	A	207	212	Right-handed alpha
Helix 11	AB2	A	212	220	Right-handed alpha
Helix 12	AB3	A	254	269	Right-handed alpha
Helix 13	AB4	A	270	272	Right-handed 310
Helix 14	AB5	A	312	324	Right-handed alpha
Helix 15	AB6	A	330	332	Right-handed 310
Helix 16	AB7	A	338	347	Right-handed alpha
Helix 17	AB8	A	359	363	Right-handed 310
Helix 18	AB9	A	386	399	Right-handed alpha
Helix 19	AC1	A	412	417	Right-handed alpha
Helix 20	AC2	A	444	446	Right-handed 310
Helix 21	AC3	A	447	462	Right-handed alpha
Helix 22	AC4	A	474	478	Right-handed 310
Helix 23	AC5	A	479	483	Right-handed 310
Helix 24	AC6	A	506	519	Right-handed alpha
Helix 25	AC7	A	521	533	Right-handed alpha
Helix 26	AC8	B	25	33	Right-handed alpha
Helix 27	AC9	B	47	53	Right-handed alpha
Helix 28	AD1	B	57	61	Right-handed 310
Helix 29	AD2	B	76	91	Right-handed alpha
Helix 30	AD3	B	131	133	Right-handed 310
Helix 31	AD4	B	143	155	Right-handed alpha
Helix 32	AD5	B	169	176	Right-handed alpha
Helix 33	AD6	B	182	187	Right-handed alpha
Helix 34	AD7	B	189	191	Right-handed 310
Helix 35	AD8	B	207	212	Right-handed alpha
Helix 36	AD9	B	212	220	Right-handed alpha
Helix 37	AE1	B	254	269	Right-handed alpha
Helix 38	AE2	B	270	272	Right-handed 310
Helix 39	AE3	B	312	324	Right-handed alpha
Helix 40	AE4	B	330	332	Right-handed 310
Helix 41	AE5	B	338	347	Right-handed alpha
Helix 42	AE6	B	359	363	Right-handed 310
Helix 43	AE7	B	386	399	Right-handed alpha
Helix 44	AE8	B	412	417	Right-handed alpha
Helix 45	AE9	B	444	446	Right-handed 310
Helix 46	AF1	B	447	462	Right-handed alpha
Helix 47	AF2	B	474	478	Right-handed 310
Helix 48	AF3	B	479	483	Right-handed 310
Helix 49	AF4	B	506	519	Right-handed alpha
Helix 50	AF5	B	521	533	Right-handed alpha

There are 10 sheets in PDB entry 9RUW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	40	first strand
Strand 2	A	70	72	anti-parallel
Strand 3	A	116	120	parallel
Strand 4	A	93	97	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	130	first strand
Strand 2	A	135	139	anti-parallel
Strand 3	A	229	236	anti-parallel
Strand 4	A	193	199	anti-parallel
Strand 5	A	205	206	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	159	first strand
Strand 2	A	238	239	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	276	278	first strand
Strand 2	A	307	309	anti-parallel
Strand 3	A	244	247	anti-parallel
Strand 4	A	334	337	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	282	first strand
Strand 2	A	405	409	anti-parallel
Strand 3	A	432	440	anti-parallel
Strand 4	A	373	381	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	40	first strand
Strand 2	B	70	72	anti-parallel
Strand 3	B	116	120	parallel
Strand 4	B	93	97	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	130	first strand
Strand 2	B	135	139	anti-parallel
Strand 3	B	229	236	anti-parallel
Strand 4	B	193	199	anti-parallel
Strand 5	B	205	206	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	159	first strand
Strand 2	B	238	239	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	278	first strand
Strand 2	B	304	309	anti-parallel
Strand 3	B	244	250	anti-parallel
Strand 4	B	334	337	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	282	first strand
Strand 2	B	405	409	anti-parallel
Strand 3	B	432	440	anti-parallel
Strand 4	B	373	381	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9RUW

Analysis of interatomic Contacts of Structural Units in PDB entry:
9RUW