Analysis of interatomic Contacts of Structural Units in PDB entry:
9RV1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9RV1 entry

There are 5 chains in PDB entry 9RV1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
1
 U 1 U 6
A
 GLU 51GLU 363
B
 ILE 6SER 396
C
 ASP 17GLU 68
H
 LEU 10ASP 416
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 50 helices in PDB entry 9RV1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
62 72Right-handed alpha
Helix 2
AA2
A
117 131Right-handed alpha
Helix 3
AA3
A
139 160Right-handed alpha
Helix 4
AA4
A
164 186Right-handed alpha
Helix 5
AA5
A
196 218Right-handed alpha
Helix 6
AA6
A
224 236Right-handed alpha
Helix 7
AA7
A
239 248Right-handed alpha
Helix 8
AA8
A
250 255Right-handed alpha
Helix 9
AA9
A
256 271Right-handed alpha
Helix 10
AB1
A
273 284Right-handed alpha
Helix 11
AB2
A
285 312Right-handed alpha
Helix 12
AB3
A
321 328Right-handed alpha
Helix 13
AB4
A
332 343Right-handed alpha
Helix 14
AB5
B
7 20Right-handed alpha
Helix 15
AB6
B
21 29Right-handed alpha
Helix 16
AB7
B
57 68Right-handed alpha
Helix 17
AB8
B
78 98Right-handed alpha
Helix 18
AB9
B
104 126Right-handed alpha
Helix 19
AC1
B
136 155Right-handed alpha
Helix 20
AC2
B
166 182Right-handed alpha
Helix 21
AC3
B
184 186Right-handed 310
Helix 22
AC4
B
187 198Right-handed alpha
Helix 23
AC5
B
205 223Right-handed alpha
Helix 24
AC6
B
225 239Right-handed alpha
Helix 25
AC7
B
244 262Right-handed alpha
Helix 26
AC8
B
267 274Right-handed alpha
Helix 27
AC9
B
277 289Right-handed alpha
Helix 28
AD1
B
290 301Right-handed alpha
Helix 29
AD2
B
301 308Right-handed alpha
Helix 30
AD3
B
310 333Right-handed alpha
Helix 31
AD4
B
340 350Right-handed alpha
Helix 32
AD5
B
356 371Right-handed alpha
Helix 33
AD6
C
28 32Right-handed 310
Helix 34
AD7
C
50 63Right-handed alpha
Helix 35
AD8
H
39 43Right-handed alpha
Helix 36
AD9
H
45 49Right-handed 310
Helix 37
AE1
H
53 63Right-handed alpha
Helix 38
AE2
H
69 81Right-handed alpha
Helix 39
AE3
H
94 107Right-handed alpha
Helix 40
AE4
H
122 137Right-handed alpha
Helix 41
AE5
H
153 163Right-handed alpha
Helix 42
AE6
H
172 182Right-handed alpha
Helix 43
AE7
H
197 204Right-handed alpha
Helix 44
AE8
H
204 218Right-handed alpha
Helix 45
AE9
H
235 241Right-handed alpha
Helix 46
AF1
H
273 285Right-handed alpha
Helix 47
AF2
H
296 310Right-handed alpha
Helix 48
AF3
H
322 335Right-handed alpha
Helix 49
AF4
H
367 376Right-handed alpha
Helix 50
AF5
H
393 407Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 9RV1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 320first strand
Strand 2
A
352 355anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
265 266first strand
Strand 2
C
39 40anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
337 339first strand
Strand 2
B
383 386anti-parallel
Strand 3
B
375 378anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
145 148first strand
Strand 2
H
168 171parallel
Strand 3
H
116 119parallel
Strand 4
H
192 196parallel
Strand 5
H
223 228parallel
Strand 6
H
85 88parallel
Strand 7
H
247 249parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
314 317first strand
Strand 2
H
340 343parallel
Strand 3
H
289 293parallel
Strand 4
H
356 361parallel
Strand 5
H
385 391parallel
Strand 6
H
262 268parallel
Strand 7
H
412 413parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il