Analysis of interatomic Contacts of Structural Units in PDB entry:
9RVE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9RVE entry

There are 4 chains in PDB entry 9RVE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ARG 716
B	MET 1	GLN 756
C	MET 1	ARG 753
D	SER 7	ILE 121

There are 76 helices in PDB entry 9RVE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	9	Right-handed alpha
Helix 2	AA2	A	10	25	Right-handed alpha
Helix 3	AA3	A	31	49	Right-handed alpha
Helix 4	AA4	A	83	99	Right-handed alpha
Helix 5	AA5	A	126	138	Right-handed alpha
Helix 6	AA6	A	158	160	Right-handed 310
Helix 7	AA7	A	164	186	Right-handed alpha
Helix 8	AA8	A	187	192	Right-handed 310
Helix 9	AA9	A	211	217	Right-handed alpha
Helix 10	AB1	A	225	235	Right-handed alpha
Helix 11	AB2	A	240	249	Right-handed alpha
Helix 12	AB3	A	302	313	Right-handed alpha
Helix 13	AB4	A	330	348	Right-handed alpha
Helix 14	AB5	A	363	370	Right-handed alpha
Helix 15	AB6	A	405	415	Right-handed alpha
Helix 16	AB7	A	433	449	Right-handed alpha
Helix 17	AB8	A	453	476	Right-handed alpha
Helix 18	AB9	A	533	538	Right-handed 310
Helix 19	AC1	A	571	580	Right-handed alpha
Helix 20	AC2	A	582	602	Right-handed alpha
Helix 21	AC3	A	632	650	Right-handed alpha
Helix 22	AC4	A	652	674	Right-handed alpha
Helix 23	AC5	A	682	692	Right-handed alpha
Helix 24	AC6	A	697	715	Right-handed alpha
Helix 25	AC7	B	5	11	Right-handed 310
Helix 26	AC8	B	13	18	Right-handed alpha
Helix 27	AC9	B	19	22	Right-handed 310
Helix 28	AD1	B	36	49	Right-handed alpha
Helix 29	AD2	B	84	99	Right-handed alpha
Helix 30	AD3	B	101	116	Right-handed alpha
Helix 31	AD4	B	118	124	Right-handed 310
Helix 32	AD5	B	138	153	Right-handed alpha
Helix 33	AD6	B	162	174	Right-handed alpha
Helix 34	AD7	B	214	222	Right-handed alpha
Helix 35	AD8	B	248	265	Right-handed alpha
Helix 36	AD9	B	277	291	Right-handed alpha
Helix 37	AE1	B	309	313	Right-handed 310
Helix 38	AE2	B	314	326	Right-handed alpha
Helix 39	AE3	B	330	338	Right-handed alpha
Helix 40	AE4	B	339	346	Right-handed alpha
Helix 41	AE5	B	371	373	Right-handed 310
Helix 42	AE6	B	382	393	Right-handed alpha
Helix 43	AE7	B	412	426	Right-handed alpha
Helix 44	AE8	B	455	473	Right-handed alpha
Helix 45	AE9	B	518	537	Right-handed alpha
Helix 46	AF1	B	540	560	Right-handed alpha
Helix 47	AF2	B	572	583	Right-handed alpha
Helix 48	AF3	B	590	594	Right-handed 310
Helix 49	AF4	B	600	604	Right-handed 310
Helix 50	AF5	B	607	612	Right-handed alpha
Helix 51	AF6	B	617	625	Right-handed alpha
Helix 52	AF7	B	685	687	Right-handed 310
Helix 53	AF8	B	688	700	Right-handed alpha
Helix 54	AF9	B	701	705	Right-handed 310
Helix 55	AG1	B	713	732	Right-handed alpha
Helix 56	AG2	B	736	755	Right-handed alpha
Helix 57	AG3	C	2	13	Right-handed alpha
Helix 58	AG4	C	13	23	Right-handed alpha
Helix 59	AG5	C	27	32	Right-handed alpha
Helix 60	AG6	C	42	53	Right-handed alpha
Helix 61	AG7	C	62	67	Right-handed alpha
Helix 62	AG8	C	92	103	Right-handed alpha
Helix 63	AG9	C	110	115	Right-handed alpha
Helix 64	AH1	C	115	127	Right-handed alpha
Helix 65	AH2	C	155	168	Right-handed alpha
Helix 66	AH3	C	169	172	Right-handed 310
Helix 67	AH4	C	173	178	Right-handed alpha
Helix 68	AH5	C	183	193	Right-handed alpha
Helix 69	AH6	C	199	212	Right-handed alpha
Helix 70	AH7	C	701	705	Right-handed 310
Helix 71	AH8	C	711	716	Right-handed 310
Helix 72	AH9	C	745	752	Right-handed alpha
Helix 73	AI1	D	8	23	Right-handed alpha
Helix 74	AI2	D	27	52	Right-handed alpha
Helix 75	AI3	D	54	90	Right-handed alpha
Helix 76	AI4	D	92	120	Right-handed alpha

There are 16 sheets in PDB entry 9RVE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	60	61	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	78	first strand
Strand 2	A	109	111	anti-parallel
Strand 3	A	116	123	anti-parallel
Strand 4	A	143	149	parallel
Strand 5	A	154	156	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	259	first strand
Strand 2	A	679	680	anti-parallel
Strand 3	B	483	486	anti-parallel
Strand 4	B	298	305	anti-parallel
Strand 5	B	446	453	anti-parallel
Strand 6	B	437	442	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	292	first strand
Strand 2	A	496	506	anti-parallel
Strand 3	A	518	526	anti-parallel
Strand 4	A	556	570	anti-parallel
Strand 5	A	541	551	anti-parallel
Strand 6	A	321	324	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	292	first strand
Strand 2	A	496	506	anti-parallel
Strand 3	A	480	490	anti-parallel
Strand 4	A	358	360	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	377	378	first strand
Strand 2	B	364	369	parallel
Strand 3	B	354	359	anti-parallel
Strand 4	A	390	392	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	627	631	first strand
Strand 2	A	619	624	anti-parallel
Strand 3	B	2	3	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	57	first strand
Strand 2	B	64	67	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	130	first strand
Strand 2	B	135	137	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	181	first strand
Strand 2	B	210	213	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	243	244	first strand
Strand 2	B	223	225	anti-parallel
Strand 3	B	348	350	parallel
Strand 4	B	400	402	anti-parallel
Strand 5	B	396	397	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	489	492	first strand
Strand 2	B	495	498	anti-parallel
Strand 3	B	501	504	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	667	668	first strand
Strand 2	C	57	58	anti-parallel
Strand 3	C	90	91	anti-parallel
Strand 4	C	78	79	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	135	first strand
Strand 2	C	240	245	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	148	first strand
Strand 2	C	214	220	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	694	699	first strand
Strand 2	C	731	736	anti-parallel
Strand 3	C	721	725	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9RVE

Analysis of interatomic Contacts of Structural Units in PDB entry:
9RVE