Analysis of interatomic Contacts of Structural Units in PDB entry:
9RVF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9RVF entry

There are 2 chains in PDB entry 9RVF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TYR 85
A
 GLU 87ASN 452
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 9RVF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 21Right-handed alpha
Helix 2
AA2
A
32 39Right-handed alpha
Helix 3
AA3
A
44 48Right-handed 310
Helix 4
AA4
A
55 70Right-handed alpha
Helix 5
AA5
A
80 85Right-handed alpha
Helix 6
AA6
A
93 110Right-handed alpha
Helix 7
AA7
A
124 129Right-handed alpha
Helix 8
AA8
A
130 135Right-handed 310
Helix 9
AA9
A
136 154Right-handed alpha
Helix 10
AB1
A
165 175Right-handed alpha
Helix 11
AB2
A
185 211Right-handed alpha
Helix 12
AB3
A
233 248Right-handed alpha
Helix 13
AB4
A
248 258Right-handed alpha
Helix 14
AB5
A
261 268Right-handed alpha
Helix 15
AB6
A
269 272Right-handed 310
Helix 16
AB7
A
279 285Right-handed alpha
Helix 17
AB8
A
331 347Right-handed alpha
Helix 18
AB9
A
372 392Right-handed alpha
Helix 19
AC1
A
409 416Right-handed 310
Helix 20
AC2
A
433 446Right-handed alpha
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There are 4 sheets in PDB entry 9RVF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 4first strand
Strand 2
A
447 449anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 14first strand
Strand 2
A
74 78parallel
Strand 3
A
113 119parallel
Strand 4
A
159 164parallel
Strand 5
A
216 222parallel
Strand 6
A
291 294parallel
Strand 7
A
351 356parallel
Strand 8
A
396 402parallel
Strand 9
A
10 14parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 228first strand
Strand 2
A
299 305parallel
Strand 3
A
313 316anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
421 423first strand
Strand 2
A
430 432anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il