Analysis of interatomic Contacts of Structural Units in PDB entry:
9RVM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9RVM entry

There are 2 chains in PDB entry 9RVM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 20	PRO 560
B	LEU 36	TYR 590

There are 45 helices in PDB entry 9RVM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	38	Right-handed alpha
Helix 2	AA2	A	39	51	Right-handed alpha
Helix 3	AA3	A	76	87	Right-handed alpha
Helix 4	AA4	A	149	156	Right-handed alpha
Helix 5	AA5	A	162	171	Right-handed alpha
Helix 6	AA6	A	173	179	Right-handed alpha
Helix 7	AA7	A	184	195	Right-handed alpha
Helix 8	AA8	A	202	219	Right-handed alpha
Helix 9	AA9	A	234	243	Right-handed alpha
Helix 10	AB1	A	257	269	Right-handed alpha
Helix 11	AB2	A	309	322	Right-handed alpha
Helix 12	AB3	A	327	332	Right-handed alpha
Helix 13	AB4	A	332	337	Right-handed alpha
Helix 14	AB5	A	354	363	Right-handed 310
Helix 15	AB6	A	376	406	Right-handed alpha
Helix 16	AB7	A	412	432	Right-handed alpha
Helix 17	AB8	A	433	435	Right-handed 310
Helix 18	AB9	A	448	452	Right-handed 310
Helix 19	AC1	A	453	463	Right-handed alpha
Helix 20	AC2	A	464	472	Right-handed 310
Helix 21	AC3	A	499	511	Right-handed alpha
Helix 22	AC4	B	42	49	Right-handed alpha
Helix 23	AC5	B	51	60	Right-handed alpha
Helix 24	AC6	B	128	139	Right-handed alpha
Helix 25	AC7	B	143	148	Right-handed alpha
Helix 26	AC8	B	151	161	Right-handed alpha
Helix 27	AC9	B	165	185	Right-handed alpha
Helix 28	AD1	B	205	216	Right-handed alpha
Helix 29	AD2	B	223	225	Right-handed 310
Helix 30	AD3	B	226	238	Right-handed alpha
Helix 31	AD4	B	279	295	Right-handed alpha
Helix 32	AD5	B	297	308	Right-handed alpha
Helix 33	AD6	B	310	322	Right-handed alpha
Helix 34	AD7	B	355	358	Right-handed 310
Helix 35	AD8	B	359	384	Right-handed alpha
Helix 36	AD9	B	399	409	Right-handed alpha
Helix 37	AE1	B	419	430	Right-handed alpha
Helix 38	AE2	B	436	439	Right-handed 310
Helix 39	AE3	B	440	454	Right-handed alpha
Helix 40	AE4	B	463	467	Right-handed 310
Helix 41	AE5	B	475	480	Right-handed alpha
Helix 42	AE6	B	502	511	Right-handed alpha
Helix 43	AE7	B	520	524	Right-handed 310
Helix 44	AE8	B	537	543	Right-handed alpha
Helix 45	AE9	B	566	570	Right-handed alpha

There are 13 sheets in PDB entry 9RVM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	477	479	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	128	first strand
Strand 2	A	99	108	anti-parallel
Strand 3	A	523	534	anti-parallel
Strand 4	A	490	492	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	281	first strand
Strand 2	A	134	138	parallel
Strand 3	A	346	349	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	224	first strand
Strand 2	A	303	306	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	229	232	first strand
Strand 2	A	290	293	parallel
Strand 3	A	249	252	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	374	375	first strand
Strand 2	B	115	116	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	545	549	first strand
Strand 2	B	189	193	anti-parallel
Strand 3	B	243	244	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	40	first strand
Strand 2	B	348	350	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	68	first strand
Strand 2	B	561	562	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	98	first strand
Strand 2	B	76	84	anti-parallel
Strand 3	B	549	556	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	256	first strand
Strand 2	B	106	111	parallel
Strand 3	B	326	332	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	200	201	first strand
Strand 2	B	262	265	parallel
Strand 3	B	218	221	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	564	565	first strand
Strand 2	B	586	587	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9RVM

Analysis of interatomic Contacts of Structural Units in PDB entry:
9RVM