Analysis of interatomic Contacts of Structural Units in PDB entry:
9RW4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9RW4 entry

There are 6 chains in PDB entry 9RW4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 695	ARG 747
B	CYS 695	ARG 747
D	GLU 5	ALA 816
C	GLU 5	ALA 816
E	A 1	U 48
F	A 1	U 48

There are 55 helices in PDB entry 9RW4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	695	747	Right-handed alpha
Helix 2	AA2	B	696	747	Right-handed alpha
Helix 3	AA3	D	6	25	Right-handed alpha
Helix 4	AA4	D	30	37	Right-handed alpha
Helix 5	AA5	D	43	50	Right-handed alpha
Helix 6	AA6	D	53	63	Right-handed alpha
Helix 7	AA7	D	96	111	Right-handed alpha
Helix 8	AA8	D	119	125	Right-handed alpha
Helix 9	AA9	D	126	128	Right-handed 310
Helix 10	AB1	D	130	137	Right-handed alpha
Helix 11	AB2	D	140	152	Right-handed alpha
Helix 12	AB3	D	521	529	Right-handed alpha
Helix 13	AB4	D	535	554	Right-handed alpha
Helix 14	AB5	D	590	592	Right-handed 310
Helix 15	AB6	D	593	600	Right-handed alpha
Helix 16	AB7	D	601	608	Right-handed alpha
Helix 17	AB8	D	617	629	Right-handed alpha
Helix 18	AB9	D	639	652	Right-handed alpha
Helix 19	AC1	D	654	658	Right-handed 310
Helix 20	AC2	D	662	671	Right-handed alpha
Helix 21	AC3	D	676	688	Right-handed alpha
Helix 22	AC4	D	690	694	Right-handed 310
Helix 23	AC5	D	698	714	Right-handed alpha
Helix 24	AC6	D	714	723	Right-handed alpha
Helix 25	AC7	D	726	742	Right-handed alpha
Helix 26	AC8	D	746	773	Right-handed alpha
Helix 27	AC9	D	780	787	Right-handed alpha
Helix 28	AD1	D	788	790	Right-handed 310
Helix 29	AD2	D	793	801	Right-handed alpha
Helix 30	AD3	D	803	816	Right-handed alpha
Helix 31	AD4	C	6	25	Right-handed alpha
Helix 32	AD5	C	30	36	Right-handed alpha
Helix 33	AD6	C	43	50	Right-handed alpha
Helix 34	AD7	C	53	63	Right-handed alpha
Helix 35	AD8	C	95	111	Right-handed alpha
Helix 36	AD9	C	121	127	Right-handed 310
Helix 37	AE1	C	130	137	Right-handed alpha
Helix 38	AE2	C	140	152	Right-handed alpha
Helix 39	AE3	C	521	530	Right-handed alpha
Helix 40	AE4	C	535	554	Right-handed alpha
Helix 41	AE5	C	595	600	Right-handed alpha
Helix 42	AE6	C	601	608	Right-handed alpha
Helix 43	AE7	C	618	630	Right-handed alpha
Helix 44	AE8	C	639	652	Right-handed alpha
Helix 45	AE9	C	654	658	Right-handed 310
Helix 46	AF1	C	662	670	Right-handed alpha
Helix 47	AF2	C	675	688	Right-handed alpha
Helix 48	AF3	C	689	694	Right-handed 310
Helix 49	AF4	C	698	714	Right-handed alpha
Helix 50	AF5	C	714	723	Right-handed alpha
Helix 51	AF6	C	726	742	Right-handed alpha
Helix 52	AF7	C	746	772	Right-handed alpha
Helix 53	AF8	C	780	786	Right-handed alpha
Helix 54	AF9	C	793	802	Right-handed alpha
Helix 55	AG1	C	803	816	Right-handed alpha

There are 10 sheets in PDB entry 9RW4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	29	first strand
Strand 2	D	74	77	anti-parallel
Strand 3	D	68	71	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	155	158	first strand
Strand 2	D	161	164	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	530	533	first strand
Strand 2	D	585	588	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	577	579	first strand
Strand 2	D	556	561	anti-parallel
Strand 3	D	611	615	parallel
Strand 4	D	636	638	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	564	565	first strand
Strand 2	D	572	573	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	29	first strand
Strand 2	C	74	76	anti-parallel
Strand 3	C	69	71	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	155	158	first strand
Strand 2	C	161	164	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	531	533	first strand
Strand 2	C	586	588	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	556	559	first strand
Strand 2	C	611	615	parallel
Strand 3	C	637	638	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	564	565	first strand
Strand 2	C	572	573	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9RW4

Analysis of interatomic Contacts of Structural Units in PDB entry:
9RW4