Analysis of interatomic Contacts of Structural Units in PDB entry:
9RW5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9RW5 entry

There are 6 chains in PDB entry 9RW5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 695	ARG 747
B	CYS 695	ARG 747
D	GLU 2	ALA 816
C	GLU 2	ALA 816
E	A 1	U 48
F	A 1	U 48

There are 56 helices in PDB entry 9RW5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	695	747	Right-handed alpha
Helix 2	AA2	B	696	747	Right-handed alpha
Helix 3	AA3	D	3	25	Right-handed alpha
Helix 4	AA4	D	30	36	Right-handed alpha
Helix 5	AA5	D	37	39	Right-handed 310
Helix 6	AA6	D	43	51	Right-handed alpha
Helix 7	AA7	D	53	63	Right-handed alpha
Helix 8	AA8	D	95	110	Right-handed alpha
Helix 9	AA9	D	119	125	Right-handed alpha
Helix 10	AB1	D	126	129	Right-handed 310
Helix 11	AB2	D	130	137	Right-handed alpha
Helix 12	AB3	D	140	152	Right-handed alpha
Helix 13	AB4	D	521	530	Right-handed alpha
Helix 14	AB5	D	535	554	Right-handed alpha
Helix 15	AB6	D	594	600	Right-handed alpha
Helix 16	AB7	D	601	608	Right-handed alpha
Helix 17	AB8	D	617	630	Right-handed alpha
Helix 18	AB9	D	639	652	Right-handed alpha
Helix 19	AC1	D	654	658	Right-handed 310
Helix 20	AC2	D	662	670	Right-handed alpha
Helix 21	AC3	D	676	688	Right-handed alpha
Helix 22	AC4	D	689	693	Right-handed 310
Helix 23	AC5	D	698	714	Right-handed alpha
Helix 24	AC6	D	714	723	Right-handed alpha
Helix 25	AC7	D	726	744	Right-handed alpha
Helix 26	AC8	D	746	773	Right-handed alpha
Helix 27	AC9	D	780	787	Right-handed alpha
Helix 28	AD1	D	788	790	Right-handed 310
Helix 29	AD2	D	793	802	Right-handed alpha
Helix 30	AD3	D	803	816	Right-handed alpha
Helix 31	AD4	C	3	25	Right-handed alpha
Helix 32	AD5	C	30	36	Right-handed alpha
Helix 33	AD6	C	43	50	Right-handed alpha
Helix 34	AD7	C	53	63	Right-handed alpha
Helix 35	AD8	C	95	112	Right-handed alpha
Helix 36	AD9	C	119	125	Right-handed alpha
Helix 37	AE1	C	126	128	Right-handed 310
Helix 38	AE2	C	130	137	Right-handed alpha
Helix 39	AE3	C	140	152	Right-handed alpha
Helix 40	AE4	C	521	530	Right-handed alpha
Helix 41	AE5	C	535	554	Right-handed alpha
Helix 42	AE6	C	594	600	Right-handed alpha
Helix 43	AE7	C	601	608	Right-handed alpha
Helix 44	AE8	C	618	630	Right-handed alpha
Helix 45	AE9	C	639	652	Right-handed alpha
Helix 46	AF1	C	654	658	Right-handed 310
Helix 47	AF2	C	662	670	Right-handed alpha
Helix 48	AF3	C	676	688	Right-handed alpha
Helix 49	AF4	C	689	693	Right-handed 310
Helix 50	AF5	C	698	714	Right-handed alpha
Helix 51	AF6	C	714	723	Right-handed alpha
Helix 52	AF7	C	726	744	Right-handed alpha
Helix 53	AF8	C	746	773	Right-handed alpha
Helix 54	AF9	C	780	788	Right-handed alpha
Helix 55	AG1	C	793	801	Right-handed alpha
Helix 56	AG2	C	803	816	Right-handed alpha

There are 6 sheets in PDB entry 9RW5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	29	first strand
Strand 2	D	74	77	anti-parallel
Strand 3	D	68	71	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	531	533	first strand
Strand 2	D	585	588	parallel
Strand 3	D	572	579	anti-parallel
Strand 4	D	563	565	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	556	559	first strand
Strand 2	D	611	615	parallel
Strand 3	D	636	638	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	29	first strand
Strand 2	C	74	76	anti-parallel
Strand 3	C	69	71	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	531	533	first strand
Strand 2	C	585	588	parallel
Strand 3	C	572	579	anti-parallel
Strand 4	C	563	565	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	556	559	first strand
Strand 2	C	611	615	parallel
Strand 3	C	636	638	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9RW5

Analysis of interatomic Contacts of Structural Units in PDB entry:
9RW5