Analysis of interatomic Contacts of Structural Units in PDB entry:
9RW8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9RW8 entry

There are 6 chains in PDB entry 9RW8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 695	ARG 747
B	CYS 695	ARG 747
C	GLU 5	ALA 816
D	GLU 2	ALA 816
E	A 1	U 57
F	A 1	U 57

There are 55 helices in PDB entry 9RW8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	695	746	Right-handed alpha
Helix 2	AA2	B	696	747	Right-handed alpha
Helix 3	AA3	C	6	25	Right-handed alpha
Helix 4	AA4	C	30	37	Right-handed alpha
Helix 5	AA5	C	43	51	Right-handed alpha
Helix 6	AA6	C	53	63	Right-handed alpha
Helix 7	AA7	C	95	111	Right-handed alpha
Helix 8	AA8	C	119	126	Right-handed alpha
Helix 9	AA9	C	130	138	Right-handed alpha
Helix 10	AB1	C	140	151	Right-handed alpha
Helix 11	AB2	C	521	529	Right-handed alpha
Helix 12	AB3	C	535	554	Right-handed alpha
Helix 13	AB4	C	595	600	Right-handed alpha
Helix 14	AB5	C	601	608	Right-handed alpha
Helix 15	AB6	C	617	630	Right-handed alpha
Helix 16	AB7	C	639	652	Right-handed alpha
Helix 17	AB8	C	662	670	Right-handed alpha
Helix 18	AB9	C	676	681	Right-handed alpha
Helix 19	AC1	C	681	688	Right-handed alpha
Helix 20	AC2	C	690	694	Right-handed 310
Helix 21	AC3	C	698	705	Right-handed alpha
Helix 22	AC4	C	706	713	Right-handed alpha
Helix 23	AC5	C	717	725	Right-handed alpha
Helix 24	AC6	C	726	746	Right-handed alpha
Helix 25	AC7	C	746	773	Right-handed alpha
Helix 26	AC8	C	780	788	Right-handed alpha
Helix 27	AC9	C	793	802	Right-handed alpha
Helix 28	AD1	C	803	814	Right-handed alpha
Helix 29	AD2	D	3	25	Right-handed alpha
Helix 30	AD3	D	29	37	Right-handed alpha
Helix 31	AD4	D	43	50	Right-handed alpha
Helix 32	AD5	D	53	63	Right-handed alpha
Helix 33	AD6	D	95	110	Right-handed alpha
Helix 34	AD7	D	119	125	Right-handed alpha
Helix 35	AD8	D	126	128	Right-handed 310
Helix 36	AD9	D	130	138	Right-handed alpha
Helix 37	AE1	D	140	152	Right-handed alpha
Helix 38	AE2	D	521	529	Right-handed alpha
Helix 39	AE3	D	535	554	Right-handed alpha
Helix 40	AE4	D	590	593	Right-handed 310
Helix 41	AE5	D	594	600	Right-handed alpha
Helix 42	AE6	D	601	608	Right-handed alpha
Helix 43	AE7	D	618	630	Right-handed alpha
Helix 44	AE8	D	639	652	Right-handed alpha
Helix 45	AE9	D	654	658	Right-handed 310
Helix 46	AF1	D	662	670	Right-handed alpha
Helix 47	AF2	D	676	688	Right-handed alpha
Helix 48	AF3	D	689	694	Right-handed 310
Helix 49	AF4	D	698	714	Right-handed alpha
Helix 50	AF5	D	714	725	Right-handed alpha
Helix 51	AF6	D	728	743	Right-handed alpha
Helix 52	AF7	D	746	773	Right-handed alpha
Helix 53	AF8	D	780	790	Right-handed alpha
Helix 54	AF9	D	793	802	Right-handed alpha
Helix 55	AG1	D	803	816	Right-handed alpha

There are 7 sheets in PDB entry 9RW8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	29	first strand
Strand 2	C	74	76	anti-parallel
Strand 3	C	69	71	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	118	first strand
Strand 2	C	161	164	anti-parallel
Strand 3	C	155	158	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	530	533	first strand
Strand 2	C	585	588	parallel
Strand 3	C	573	579	anti-parallel
Strand 4	C	557	564	anti-parallel
Strand 5	C	612	615	parallel
Strand 6	C	636	638	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	68	71	first strand
Strand 2	D	74	77	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	117	118	first strand
Strand 2	D	161	164	anti-parallel
Strand 3	D	155	158	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	530	533	first strand
Strand 2	D	585	588	parallel
Strand 3	D	576	580	anti-parallel
Strand 4	D	557	561	anti-parallel
Strand 5	D	612	615	parallel
Strand 6	D	636	638	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	564	565	first strand
Strand 2	D	572	573	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9RW8

Analysis of interatomic Contacts of Structural Units in PDB entry:
9RW8