Analysis of interatomic Contacts of Structural Units in PDB entry:
9RX4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9RX4 entry

There are 7 chains in PDB entry 9RX4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 2	PHE 871
B	GLY 2	LYS 1358
C	GLU 110	PHE 447
D	ALA 39	LEU 401
E	PRO 6	MET 176
I	PHE 16	PRO 24
L	ASN -7	ASP 91

There are129 helices in PDB entry 9RX4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	41	Right-handed alpha
Helix 2	AA2	A	42	46	Right-handed 310
Helix 3	AA3	A	98	100	Right-handed 310
Helix 4	AA4	A	170	184	Right-handed alpha
Helix 5	AA5	A	190	208	Right-handed alpha
Helix 6	AA6	A	209	212	Right-handed 310
Helix 7	AA7	A	265	275	Right-handed alpha
Helix 8	AA8	A	289	301	Right-handed alpha
Helix 9	AA9	A	309	319	Right-handed alpha
Helix 10	AB1	A	321	328	Right-handed 310
Helix 11	AB2	A	329	335	Right-handed alpha
Helix 12	AB3	A	341	355	Right-handed alpha
Helix 13	AB4	A	361	368	Right-handed 310
Helix 14	AB5	A	373	388	Right-handed alpha
Helix 15	AB6	A	395	402	Right-handed alpha
Helix 16	AB7	A	403	406	Right-handed 310
Helix 17	AB8	A	408	413	Right-handed alpha
Helix 18	AB9	A	476	484	Right-handed alpha
Helix 19	AC1	A	486	501	Right-handed alpha
Helix 20	AC2	A	503	510	Right-handed alpha
Helix 21	AC3	A	510	529	Right-handed alpha
Helix 22	AC4	A	532	561	Right-handed alpha
Helix 23	AC5	A	565	578	Right-handed alpha
Helix 24	AC6	A	579	584	Right-handed alpha
Helix 25	AC7	A	641	661	Right-handed alpha
Helix 26	AC8	A	690	697	Right-handed alpha
Helix 27	AC9	A	699	708	Right-handed alpha
Helix 28	AD1	A	713	717	Right-handed 310
Helix 29	AD2	A	718	739	Right-handed alpha
Helix 30	AD3	A	780	786	Right-handed alpha
Helix 31	AD4	A	792	811	Right-handed alpha
Helix 32	AD5	A	812	822	Right-handed alpha
Helix 33	AD6	A	828	833	Right-handed alpha
Helix 34	AD7	A	837	847	Right-handed alpha
Helix 35	AD8	A	851	868	Right-handed alpha
Helix 36	AD9	A	869	871	Right-handed 310
Helix 37	AE1	B	9	13	Right-handed 310
Helix 38	AE2	B	17	22	Right-handed 310
Helix 39	AE3	B	64	78	Right-handed alpha
Helix 40	AE4	B	110	115	Right-handed alpha
Helix 41	AE5	B	121	141	Right-handed alpha
Helix 42	AE6	B	150	152	Right-handed 310
Helix 43	AE7	B	182	187	Right-handed alpha
Helix 44	AE8	B	198	200	Right-handed 310
Helix 45	AE9	B	204	213	Right-handed alpha
Helix 46	AF1	B	229	233	Right-handed alpha
Helix 47	AF2	B	238	253	Right-handed alpha
Helix 48	AF3	B	260	269	Right-handed alpha
Helix 49	AF4	B	276	281	Right-handed 310
Helix 50	AF5	B	283	294	Right-handed alpha
Helix 51	AF6	B	297	301	Right-handed 310
Helix 52	AF7	B	303	311	Right-handed alpha
Helix 53	AF8	B	317	323	Right-handed alpha
Helix 54	AF9	B	323	329	Right-handed alpha
Helix 55	AG1	B	330	333	Right-handed 310
Helix 56	AG2	B	338	349	Right-handed alpha
Helix 57	AG3	B	349	358	Right-handed alpha
Helix 58	AG4	B	374	384	Right-handed alpha
Helix 59	AG5	B	391	405	Right-handed alpha
Helix 60	AG6	B	406	409	Right-handed 310
Helix 61	AG7	B	410	418	Right-handed alpha
Helix 62	AG8	B	418	425	Right-handed alpha
Helix 63	AG9	B	426	428	Right-handed 310
Helix 64	AH1	B	430	445	Right-handed alpha
Helix 65	AH2	B	446	448	Right-handed 310
Helix 66	AH3	B	457	467	Right-handed alpha
Helix 67	AH4	B	468	473	Right-handed 310
Helix 68	AH5	B	475	484	Right-handed alpha
Helix 69	AH6	B	485	510	Right-handed alpha
Helix 70	AH7	B	523	546	Right-handed alpha
Helix 71	AH8	B	549	560	Right-handed alpha
Helix 72	AH9	B	560	568	Right-handed alpha
Helix 73	AI1	B	568	583	Right-handed alpha
Helix 74	AI2	B	584	587	Right-handed 310
Helix 75	AI3	B	590	609	Right-handed alpha
Helix 76	AI4	B	610	615	Right-handed 310
Helix 77	AI5	B	616	624	Right-handed alpha
Helix 78	AI6	B	630	646	Right-handed alpha
Helix 79	AI7	B	649	661	Right-handed alpha
Helix 80	AI8	B	662	666	Right-handed 310
Helix 81	AI9	B	668	686	Right-handed alpha
Helix 82	AJ1	B	688	695	Right-handed alpha
Helix 83	AJ2	B	695	700	Right-handed alpha
Helix 84	AJ3	B	701	703	Right-handed 310
Helix 85	AJ4	B	725	734	Right-handed alpha
Helix 86	AJ5	B	737	753	Right-handed alpha
Helix 87	AJ6	B	764	778	Right-handed alpha
Helix 88	AJ7	B	781	790	Right-handed alpha
Helix 89	AJ8	B	790	809	Right-handed alpha
Helix 90	AJ9	B	810	812	Right-handed 310
Helix 91	AK1	B	938	962	Right-handed alpha
Helix 92	AK2	B	963	968	Right-handed 310
Helix 93	AK3	B	1138	1142	Right-handed 310
Helix 94	AK4	B	1272	1276	Right-handed 310
Helix 95	AK5	B	1284	1286	Right-handed 310
Helix 96	AK6	C	111	127	Right-handed alpha
Helix 97	AK7	C	138	170	Right-handed alpha
Helix 98	AK8	C	177	191	Right-handed alpha
Helix 99	AK9	C	193	217	Right-handed alpha
Helix 100	AL1	C	218	260	Right-handed alpha
Helix 101	AL2	C	263	267	Right-handed 310
Helix 102	AL3	C	268	274	Right-handed alpha
Helix 103	AL4	C	299	322	Right-handed alpha
Helix 104	AL5	C	333	336	Right-handed 310
Helix 105	AL6	C	357	361	Right-handed 310
Helix 106	AL7	C	363	384	Right-handed alpha
Helix 107	AL8	C	421	447	Right-handed alpha
Helix 108	AL9	D	55	62	Right-handed alpha
Helix 109	AM1	D	74	99	Right-handed alpha
Helix 110	AM2	D	100	107	Right-handed alpha
Helix 111	AM3	D	109	177	Right-handed alpha
Helix 112	AM4	D	179	205	Right-handed alpha
Helix 113	AM5	D	275	278	Right-handed 310
Helix 114	AM6	D	279	284	Right-handed alpha
Helix 115	AM7	D	297	322	Right-handed alpha
Helix 116	AM8	D	330	334	Right-handed 310
Helix 117	AM9	D	340	362	Right-handed alpha
Helix 118	AN1	D	365	369	Right-handed 310
Helix 119	AN2	D	373	383	Right-handed alpha
Helix 120	AN3	E	24	33	Right-handed alpha
Helix 121	AN4	E	70	74	Right-handed 310
Helix 122	AN5	E	95	101	Right-handed alpha
Helix 123	AN6	E	101	113	Right-handed alpha
Helix 124	AN7	E	135	144	Right-handed alpha
Helix 125	AN8	E	160	169	Right-handed alpha
Helix 126	AN9	E	169	176	Right-handed alpha
Helix 127	AO1	L	6	23	Right-handed alpha
Helix 128	AO2	L	26	42	Right-handed alpha
Helix 129	AO3	L	51	91	Right-handed alpha

There are 22 sheets in PDB entry 9RX4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	11	first strand
Strand 2	A	232	234	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	69	first strand
Strand 2	A	58	65	anti-parallel
Strand 3	A	74	75	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	69	first strand
Strand 2	A	58	65	anti-parallel
Strand 3	A	105	113	anti-parallel
Strand 4	A	119	128	anti-parallel
Strand 5	A	139	147	anti-parallel
Strand 6	A	215	221	anti-parallel
Strand 7	A	18	27	anti-parallel
Strand 8	A	86	96	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	229	230	first strand
Strand 2	A	223	226	anti-parallel
Strand 3	B	818	819	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	591	592	first strand
Strand 2	A	600	604	anti-parallel
Strand 3	A	619	625	anti-parallel
Strand 4	A	610	611	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	591	592	first strand
Strand 2	A	600	604	anti-parallel
Strand 3	A	619	625	anti-parallel
Strand 4	A	630	637	anti-parallel
Strand 5	A	679	683	anti-parallel
Strand 6	A	672	674	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	688	689	first strand
Strand 2	A	749	751	anti-parallel
Strand 3	A	757	759	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	34	first strand
Strand 2	B	39	44	anti-parallel
Strand 3	B	49	56	anti-parallel
Strand 4	B	98	104	anti-parallel
Strand 5	B	89	91	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	109	first strand
Strand 2	B	154	156	anti-parallel
Strand 3	B	162	164	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	176	first strand
Strand 2	B	202	203	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	984	989	first strand
Strand 2	B	1354	1358	anti-parallel
Strand 3	B	1343	1349	anti-parallel
Strand 4	B	1332	1339	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	996	1001	first strand
Strand 2	B	1007	1012	anti-parallel
Strand 3	B	1017	1021	anti-parallel
Strand 4	B	1036	1038	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1045	1051	first strand
Strand 2	B	1056	1061	anti-parallel
Strand 3	B	1065	1071	anti-parallel
Strand 4	B	1082	1089	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1100	1105	first strand
Strand 2	B	1110	1115	anti-parallel
Strand 3	B	1120	1125	anti-parallel
Strand 4	B	1134	1136	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1144	1149	first strand
Strand 2	B	1155	1160	anti-parallel
Strand 3	B	1164	1169	anti-parallel
Strand 4	B	1175	1180	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1187	1192	first strand
Strand 2	B	1200	1204	anti-parallel
Strand 3	B	1209	1212	anti-parallel
Strand 4	B	1222	1225	anti-parallel
Strand 5	B	1298	1305	parallel
Strand 6	B	1288	1295	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1242	1248	first strand
Strand 2	B	1255	1260	anti-parallel
Strand 3	B	1265	1269	anti-parallel
Strand 4	B	1277	1278	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	276	279	first strand
Strand 2	C	282	285	anti-parallel
Strand 3	C	288	290	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	328	331	first strand
Strand 2	C	338	341	anti-parallel
Strand 3	C	349	350	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	396	397	first strand
Strand 2	C	402	404	anti-parallel
Strand 3	C	412	414	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	208	209	first strand
Strand 2	D	261	263	anti-parallel
Strand 3	D	269	270	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	47	55	first strand
Strand 2	E	58	66	anti-parallel
Strand 3	E	10	18	parallel
Strand 4	E	87	92	parallel
Strand 5	E	119	124	parallel
Strand 6	E	150	152	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9RX4

Analysis of interatomic Contacts of Structural Units in PDB entry:
9RX4