Analysis of interatomic Contacts of Structural Units in PDB entry:
9RXM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9RXM entry

There are 5 chains in PDB entry 9RXM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 2PRO 200
B
 GLY 1ALA 237
D
 PHE 1TYR 9
E
 HIS 1TRP 272
F
 ILE 1MET 99
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 9RXM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
79 83Right-handed 310
Helix 2
AA2
B
80 84Right-handed 310
Helix 3
AA3
B
114 118Right-handed 310
Helix 4
AA4
E
54 83Right-handed alpha
Helix 5
AA5
E
135 148Right-handed alpha
Helix 6
AA6
E
149 160Right-handed alpha
Helix 7
AA7
E
160 173Right-handed alpha
Helix 8
AA8
E
251 255Right-handed 310
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There are 16 sheets in PDB entry 9RXM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
22 24anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 11first strand
Strand 2
A
105 108parallel
Strand 3
A
84 87anti-parallel
Strand 4
A
33 36anti-parallel
Strand 5
A
42 46anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 55first strand
Strand 2
A
61 64anti-parallel
Strand 3
A
71 74anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 120first strand
Strand 2
A
134 137anti-parallel
Strand 3
A
172 176anti-parallel
Strand 4
A
154 155anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 5first strand
Strand 2
B
18 22anti-parallel
Strand 3
B
72 76anti-parallel
Strand 4
B
62 66anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 55first strand
Strand 2
B
40 48anti-parallel
Strand 3
B
29 36anti-parallel
Strand 4
B
86 92anti-parallel
Strand 5
B
102 103anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 55first strand
Strand 2
B
40 48anti-parallel
Strand 3
B
29 36anti-parallel
Strand 4
B
86 92anti-parallel
Strand 5
B
107 108anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 126first strand
Strand 2
B
140 143anti-parallel
Strand 3
B
191 193anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 148first strand
Strand 2
B
186 188anti-parallel
Strand 3
B
175 176anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 212first strand
Strand 2
B
231 235anti-parallel
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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
44 45first strand
Strand 2
E
29 34anti-parallel
Strand 3
E
22 26anti-parallel
Strand 4
E
2 8anti-parallel
Strand 5
E
93 101anti-parallel
Strand 6
E
107 116anti-parallel
Strand 7
E
119 123anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
188 191first strand
Strand 2
E
197 206anti-parallel
Strand 3
E
239 247anti-parallel
Strand 4
E
226 228anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
188 191first strand
Strand 2
E
197 206anti-parallel
Strand 3
E
239 247anti-parallel
Strand 4
E
232 233anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
212 213first strand
Strand 2
E
259 260anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
8 11first strand
Strand 2
F
21 30anti-parallel
Strand 3
F
62 70anti-parallel
Strand 4
F
55 56anti-parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
36 41first strand
Strand 2
F
78 83anti-parallel
Strand 3
F
93 94anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il